BtaINT0163470 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36377550-36378231:-
Coord C1 exon
chr25:36378087-36378231
Coord A exon
chr25:36377795-36378086
Coord C2 exon
chr25:36377550-36377794
Length
292 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GCTGCCTTTCTGTCCTCCAGGGA
3' ss Score
10.3
Exon sequences
Seq C1 exon
GTTGGGGAGAGATGGTACACGGACAACACGTGTTCTCGGCTCTGCACCTGCTCCATCCACAACAACATCTCCTGCCTCCAAACCTCCTGCAAGCCTGGCCAGATGTGCTGGCCCCGTGATGGGCTGATGCGGTGCCGGGGGGCAG
Seq A exon
GTAGGAGGCCCACCAAGCGTGGAGGAGGACCTTCAGCCACCAAAACTGCCCCTCCGTCCAGGAGGGCTCCTCGGGGTTTACTCATGGCTCCCATGGCAATCGTGAACTCGGGATGTTATAAGTCTCTCCCAGGCTGAGCGGCACCTGCTCCACCTCCTCGGGTCTTGACTCTTTTCTTTGTCCCCTCCCCTTCTGAGGCTCCCTCTCCTCCACATCCTTTCCTTGAAGGTAGGGAGAAGGCCTGTTCTTGCTAGAGGCTGGACCACTCCTCAGCTGCCTTTCTGTCCTCCAG
Seq C2 exon
GGATGGGAGTGTGCCAGATCCAGGACAGGTCCCAGTACATAAGCTTCGATGGCAGTTACCATGCCGTCCGGGGCGCCTGCACTTACGTCTTGGCGAAAACGTGCCACTCCACCATGGACCTGCCTTTCTTCAAGATCAGTGGCAAGAATGGGAAGCAGCAAGACCAAGCCCACACTTTCTACCTCCGCAAGGTCTACGTACACGTCTTTAATACTCTGGTCACCCTGAAGAAGGACCACGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432:ENSBTAT00000044014:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(78.9=91.8)
A:
NA
C2:
PF0009420=VWD=PU(49.7=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGACAACACGTGTTCTC
R:
CTTGGTCTTGCTGCTTCCCAT
Band lengths:
297-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]