HsaINT0184454 @ hg19
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin [Source:HGNC Symbol;Acc:12857]
Coordinates
chr7:100371344-100373197:+
Coord C1 exon
chr7:100371344-100371487
Coord A exon
chr7:100371488-100372949
Coord C2 exon
chr7:100372950-100373197
Length
1462 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CTGTCTCTCTGTCCTCCCAGGTG
3' ss Score
12.78
Exon sequences
Seq C1 exon
GTCGGGGAGCGCTGGTACACAGAGAACACCTGCACCAGGCTCTGCACCTGCTCCGTCCACAACAACATCACCTGCTTCCAGAGCACCTGCAAACCCAACCAGATATGCTGGGCCCTGGATGGGCTGCTCCGTTTCGGGCCTCAG
Seq A exon
GTAGGAGGACCACGGTGATGGGGGGACTCCACAGCCCTGAGGCCCACTCTCCCAACTCCCCAACAGACTCCCTGCTGCCTGTAGCACTGGGTTTCAGGTTTTGACTGGTAACTCTGCTGCAACCAAGAGCTTCTGGTGGGTAAGATGACCTCCAACTGCTGAGAAGGGAACCTTGGGGCTCACCCATCCTTCTCCTGTAGCGGCCACCAACTTAGATGGGATATTATAAATCCTTCCCTGGGGCCAGACGCCATGGCTCACACTTGTAATCTCAGCACTTTGGAAGGCCAAGGCGGGTGGATCACTTGAGACCAGAAGTTCAAGACCAGCCTGACCAACATGGCTAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCTATAATCCCAGCTACTCGAGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCAGAGATCGTGCCATTGCACTCCAGCCTGGGCGACAAAACTCCGTCTCTAAATAAATAAATCTTTTCCTGGAGGCCAGGCATGGTGGCTCATGCCTGTAATCCCAGTGGTTTGGGAAGCTGAAGTGGGAGAATCACTTGAGGCTAGTAGTTCAAGACCAGCCTGGGCAACATAGTGAGACCCCATCTCTACAAAAAAATAAAAGCTAAAAAGTTAAAAAGTAAAATTAAAGACATTGCACCTGTAGTCCCTGCTACTTGGGAGGCTGAGGTAGGAGGATCTCTTGAGCCCAGGAATTAGAGTCTGCATGCCAGCCTGGGTAACAGAACAAGACCCTGTCTCTAAAAAAAATTTTTTTTAATTAGTTGAATAGGGTACTTTATGCCTGTAGTCCCAGATACTCTGGAGGCTGAGGTAGGAGGACCACTTGAGCCCAGGAGTTTGAGGCTGCAGTGAGCTATGACCATATGCCATTGCATTCCAGCCTGGGTGACAGAGAGAGACCATGTCTCAAATAAAAAAAAAAAAAATCCTTCCTCCAAAGAATCATGCCCCTCCTCCACCCGTAAACCTCACCACGCCTCCTAGCCCTGGCCCTGGGGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGATGCAGTGTCTCTGTTGCCTGGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTGCAACCTCCATCTCCCTGGTTCAAGCGATTCTCCTGCCTCAGCCTTCCAAGTAGCTGAGATTACAGGCACACGTCACCACACCCTAATTTTTTTGTATTTTTTTTAGTAGAGACGGGTTTTTACCATGTTGGTCAGGCTGGTATCAAACCAGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCACAGCCGGACCTGGGGTCTTGACTCTTTTCTGGAAGGCAGGGAGAACCCAGGACTAGTTTCCCAGGGACCCTGTACCTGCCAGAGGAGCGTCATAGCCCAGCTGTCTCTCTGTCCTCCCAG
Seq C2 exon
GTGTGGGAGTGTGTCAGCTCCCAGGGGAGTCCCACTACGTGAGCTTTGATGGTAGTAACCATTCTATCCCGGACGCCTGCACTCTTGTCCTGGTGAAAGTGTGCCACCCCGCCATGGCCTTGCCCTTCTTCAAGATCAGTGCCAAGCATGAGAAGGAGGAAGGTGGAACTGAGGCTTTCCGCCTTCATGAGGTCTACATTGACATCTACGATGCCCAGGTCACCCTGCAGAAGGGCCACCGTGTGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-ZAN:NM_003386:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(78.2=89.6)
A:
NA
C2:
PF0182612=TIL=PD(10.9=7.2),PF0009420=VWD=PU(50.0=94.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGAGAACACCTGCACCAG
R:
GGTGACCTGGGCATCGTAGA
Band lengths:
351-1813
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)