BtaINT0163471 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36377294-36377794:-
Coord C1 exon
chr25:36377550-36377794
Coord A exon
chr25:36377459-36377549
Coord C2 exon
chr25:36377294-36377458
Length
91 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GGTCCTGCCTTCCTCTCTAGATC
3' ss Score
10.35
Exon sequences
Seq C1 exon
GGATGGGAGTGTGCCAGATCCAGGACAGGTCCCAGTACATAAGCTTCGATGGCAGTTACCATGCCGTCCGGGGCGCCTGCACTTACGTCTTGGCGAAAACGTGCCACTCCACCATGGACCTGCCTTTCTTCAAGATCAGTGGCAAGAATGGGAAGCAGCAAGACCAAGCCCACACTTTCTACCTCCGCAAGGTCTACGTACACGTCTTTAATACTCTGGTCACCCTGAAGAAGGACCACGTGCTG
Seq A exon
GTGAGCGGGGCGGTGGTGGGGGGAGGACGTGGGCTCTGGGGACGGGACTCTGGTCCTTCCTGCTGCTCACGGGTCCTGCCTTCCTCTCTAG
Seq C2 exon
ATCAATGGCACATGGGTCCCCCTGCCCGCGACCTCCCAGATCCGGGGGGTCAAAGTCATTTCCAGGGATGGCTACATGGTGCTCACCATCAGCATTGGGGTGGAAGTCAAGTTTGATGGCAGTGGTTTCCTTGAGATCGAAATCCCGAAAGCCTATTATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432:ENSBTAT00000044014:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(49.7=93.9)
A:
NA
C2:
PF0009420=VWD=FE(34.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGAAGCAGCAAGACCAAG
R:
ACCATGTAGCCATCCCTGGAA
Band lengths:
178-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]