MmuINT0177504 @ mm10
Intron Retention
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137436323-137436837:-
Coord C1 exon
chr5:137436578-137436837
Coord A exon
chr5:137436488-137436577
Coord C2 exon
chr5:137436323-137436487
Length
90 bp
Sequences
Splice sites
5' ss Seq
TTGGTACTA
5' ss Score
1.12
3' ss Seq
AGTTCTGTCTTCCTCTTCAGATC
3' ss Score
11.5
Exon sequences
Seq C1 exon
AGATGGGAGAGTGTCGCATCTCAGAGGATTCCCAGATCGTGAGCTTTGATGATCATAGCCATCCTATCCAAGACACATGTACTTACATCTTGGTCAAAGTATGCCACCCCAACACGAACATGCCTTTCTTCATGATCAGTGCCAAGACCGACATAAACACCAACGGCAAAAACAAGACTTTCGGTGTCTATCAGCTCTACATTGACATCTTCAACTTCCACATCACTCTTCAGAAAGACCATTTAGTCCTCATAAGCTTG
Seq A exon
GTACTAATCTTGGGCTGGGAAAGAAGCGCGAGCACTGGCAGCAGAGCCTCTGGTTCCCGAATCTATTCATAGTTCTGTCTTCCTCTTCAG
Seq C2 exon
ATCAATGACTCAATAGTCACCCTTCCCACCACCACCCACATCCCAGGAGTCAGTGTCATGACTGAAGACGTCTATACCATTGTCACAATTAAGGATGAAATTCAAGTCAAGTTTGAGAGCAATAATTTCTTAGATGTCAAAATCCCTGCATCCTCTAATGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173:ENSMUST00000117564:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(51.2=94.3)
A:
NA
C2:
PF0009420=VWD=FE(33.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACATAAACACCAACGGCA
R:
ACACTGACTCCTGGGATGTGG
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types