GgaINT1001138 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NB86]
Coordinates
chr9:12681845-12682397:-
Coord C1 exon
chr9:12682222-12682397
Coord A exon
chr9:12682129-12682221
Coord C2 exon
chr9:12681845-12682128
Length
93 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
CTGGGTTTCTGTCCTTCCAGGTC
3' ss Score
10.67
Exon sequences
Seq C1 exon
GCAACTGCACCTACACCCTCTCCAAGCTGTGCGAGAGCAACAGCTCACTGCCCTTCTTCAACGTGGAAGCTGCCAATGAACACCGAGGAGGGAACACTCGCGTGTCCTACGTCCAGTACGTGGACGTTGATGTGTACGGCCAGCGCATAAGGCTTGGGAAGGGTGGCGTGGTGACG
Seq A exon
GTAAGCACAAAGGGGAGCAGTGGCGGGGCTGTGCCGGGGGAGAGCCGTGCCAAAGGGATTGCTCCAACCCTGTCTGGGTTTCTGTCCTTCCAG
Seq C2 exon
GTCAACGGCGAGCCAGAGGTGCTGCCCTGCACCCCATCTGTGGGCGTGCAAGTCTCGTCCAGCGGGTTCTACACCATGGTGACAACAGACTTTGGCTTGAGAGTGAAGTTTGATGGGAACCATCGGGTGGAGGTGACGCTTCCAAGCACCTTTGGGCAGAAGGTTTGTGGCATGTGTGGCAACTACAACGGGATGGCAGCAGACGACTTCCTGAACCCTGACGGGGTGCTGGAGCCAGACTCCACCAGCCTGGGTAACAGCTGGCAGGTGTCTAATGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007208:ENSGALT00000011664:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(37.4=100)
A:
NA
C2:
PF0009420=VWD=PD(48.4=78.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATAAGGCTTGGGAAGGGTG
R:
CTTGGAAGCGTCACCTCCAC
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]