MmuINT0006239 @ mm9
Intron Retention
Gene
ENSMUSG00000078776 | 9530053A07Rik
Description
RIKEN cDNA 9530053A07 gene [Source:MGI Symbol;Acc:MGI:2442118]
Coordinates
chr7:28928851-28932225:+
Coord C1 exon
chr7:28928851-28929443
Coord A exon
chr7:28929444-28931639
Coord C2 exon
chr7:28931640-28932225
Length
2196 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGGCATTCCCTGACTCCCAGGTG
3' ss Score
6.84
Exon sequences
Seq C1 exon
CAATGACCTGCCCACCTCACAGCCACTATGAGCTGTGTCAGCGAGGCTGTCCATTGACCTGTGGAGACCAGCCAGTGCCAGGAGGCTGTGGCTCAGATTGCTACGAGAGCTGTGTCTGTGATGAGGGCTATGTCCTTAGCGGTGAGGCCTGTGTACCCCTGGCATCCTGTGGTTGCGTATACCAGGGCATTTACCATGCGCCAGGTGATGAGTTCTATCCTGGCCCTGAATGTAACTCCCTCTGCCACTGTGATAAGGGTGGCCTGGTGTCTTGTCAACCCTCACACTGCAGCCCACATGAAGTCTGTAAAGTGTTGGATGGCATCCTGAGATGTGTGGGTGAGGGCTCTGCCACCTGTCAGGTATCAGGGGCTTCACATTACACTACCTTTGATGGCCGCCATTTTGACTTCATGGGCACCTGTGTGCACGTGCTGGCCCAGACCTGCTGGACCCGACCTGGCCTGAAACCATTCACAATACTGCAGGAAAACGCAGTCCAGGGCAACAAGCAAGTCAGTGTGACCAAGAAGATCACCATCGAGGTAGCCAACTACACCCTGCAGCTGGAGCAGAATCAGTGGAAGGTCAAG
Seq A exon
GTGAGAGCAGAGGTGGGGCCCTAGAGGAGACACGGATCTCAGTCAGGGGTTGATATGTGAGTGGGGCATGAGCAGTGCTCAGTCCAGGAGGGGGCTTAGAGACCCAAGAGAATAAGTGAGAAAGTGTGACCTCAACAAGAGGAGAAACGGATAGGAATCCTAGAGTAAGGAGGCCTCGGGGACCTGGAGCCTTTCCCATGTTGCTTTGTCTTTCCTGTTCTATTCTTAACTGATCCTCTCCTCATCTTCCTATGTGCTCCATCTTCCTCCCACTATACCTGCTCCCTCCCTGTTGTACGACACAATTTCTGAGAAGACTAGAACAAACATCAACTCACCCCTAGATGGAAATTAATAACGGGCCAGAATAACAATACCACCCAAGTTTAACTTGATGAACCAGTGAGTTTATGGGTTTCTTAAAGGAATTCAAACTCATGGATCATAAACAACACAAAGGAAACTGGGAAAACAGAAGTTCACCCCAGCACAGATGATAACTGAGCAAAGCTGAAACCCTGGGGTTTTTTGAAGCACCTTCAGCTAGCTCTACAAGGAGGGGAGTCTCCAAACAGTCCCCATTGCTTATATAACCTTGAGGAGGGAGGGACCTTGAATATCTGCTAAGTTTTAGGAACTTCCTGAGACGTGTGAGTTACTTACTTCCTTAGTCTTATAGAGCTTCCTTTTTAGAACTTCTGCATCCCTCAAGGATGAAATATATTTATGAGAAATTGCTACCCAACACTGCCCAAGCAGTGGTTACTTTCCTACCCACAAGGAGCACTTGAGGTAGTCACAACACAGAAAACTTCAGAGGTGGGAAAGGATCTGTAACCCCCATCATCCCTTAACAACCATAGCAACAACAGTAAACCAGCTGCTTGTTTTGCATGCTGCCCCAGGCCCATTGGCTGCTAAGCAACTGGCACTCTCACCATCAATTTAACCTTGCAATGGTAGCTGAAGAAGGCACCATGATTGGATTCATTTTTTTGGAAGACAAAGTCCCATCACTGTGTTGAAGTTCTTTAGTAAAGGCAAGGCATTTGCTGCTAAGAAACAGCACACTGGGTCCCGCACCACACCCTATTGCTTTTCTGAACAGGAAGATTGAGTCTCACAGGAGAGTGGCATTTGAATACACTGGGAATATCCCCCACTGACATGCAACACACAGCCATTGTCCTGGGAGCAGGAGGTACAAGAGCTGTCACACGGGCTGTATGTGGGTTGCAGGTGCAGCTTCTTCCCTAACAAGCCCCAGGCTCTGAGGTTAGCAGTTGACAGATGAGCAGCTCCAGACTCGTGGGAACAGTCTCTGTTCCTGTCACCAGACCCTAGCTTCCCTGTGGCTGTCCCTCACTGCAGCGCCAGAAACTGAGCCCAGAGGGTTAAGTGACTTGCCTTTATTCACTACCAGCCTGGGGAGGAATGGTGTTAATGTCTTTTGGACACTCTAGACATGCCTAGACTGTGCCTTTCCCCTGCCTCCTCCCAGTCTCCTCACACCTATGAAAAGCCAGTCGGCCAGGAGTGTGATGAGGAAGGGCACATATGTGGTGACATCAGGGGTGCACCAGGCAGAGCCCTCGGGTGATCCTCAGATGAGGCATGGAGCCTGGCTTTGCATCCAGCCACACTTACAGCAGCCACTCTGAGTGCCCCTGACTGCCAGGATGACTTGCATACACAGTCCCAAGCCACAGGGCGTGTCTACAGCCAAAGCCTTTGCAGGCGTCCTGTATCAGATTCACTAGATGACACTCTGGAGACAAGGCACCTGGTCCCTCCTAGACAGACAGGAAGCAGAAATACAGGTGAGTCTCCTGCCCAAGGGCACAGAAGGGTCTTCCCATGATGCTCTTTCTATGGTCTCTGTCCTATCCCAGTGCCTCACAGGACACTTGCCATTTGATTCAGGGTCCACTTGGATCCATGGTGGGTTTTTGGCAAGATTATACTTTTTATTACCCCAACAAAGACCCTTTTTTTTAAAATCTGTTCACATTTCAAGGTCCTGGCTCATATAAGATGCTGTTATTCTACATGTTTTACAAATATGAAAATGGGGGGGAGCAAAGGGTTGCTCAGGATTTCAGTGTCAGACAGGAACATCTAAAACAGACTAGGGACACTTAGTGACAGACTGCCTCAAAGCGCGCCCTCTGAAGCTTGGCATTCCCTGACTCCCAG
Seq C2 exon
GTGAACGGTGTGGACATGAAGCTGCCTGTGTTGCTGGATGAGGATAGAGTTCAGGCCTTCCGGCATGGCACAGATATGGTAATCGAGACCAAATTTGGCCTGCTCGTGTCCTACGATCTCAAATACAGCGTGCGTGTCAAGGTTCCCCACAACTACTATAAACACATGTGTGGCCTGTGTGGGGACTACAATGATGACCCCAAGAATGACTTCCAGAAGTCCGATGGCTCACAGGCAGCCAGTTCCAATGAGCTGGGAGACTCCTGGGAAAAAGCTGTGCCAGGTTCTTCCTGCACACCGCGGCCTTCCTGCAAACCGGGACAGGCTTGCAGCCCGAAGTGCTACCCAACTCTGGAGAAGAAGTACCGCGGGAAAGAGTTCTGTGGGCTGATCACCAGCCCCACGGGGCCACTGGCTGCCTGCCACAAACTGTTGGACCCCCAGGGTCCCTTGCAAAGCTGTGTCTTTGACCTCTGCCTGGGTGGTGGGAACCAGAGCATTCTCTGCAGCAGCATCCATGCCTACGTGAGCGCCTGCCAGGCGGCTGGGGGCACTGTCAAGCCATGGAGAAACCAGACTTTCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078776-9530053A07Rik:NM_001164655:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.3),PF0009420=VWD=PU(50.0=39.4)
A:
NA
C2:
PF0009420=VWD=PD(48.7=38.8),PF087426=C8=WD(100=38.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: