BtaINT0163475 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36372896-36376650:-
Coord C1 exon
chr25:36376361-36376650
Coord A exon
chr25:36373108-36376360
Coord C2 exon
chr25:36372896-36373107
Length
3253 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
TTTCTCCCCCACCCTTCCAGCTC
3' ss Score
9.8
Exon sequences
Seq C1 exon
TTGCCGAGATGATGACAAGGCCGAAGAAGAATCGGAGGAGCCAGAAACGACCTGCCAGCCAGCTGACCTGGAGAGAGCCAAGGAGCAATGCCAGGCAGTCTTTCAGACTCCAGGCTGGGCAAGGTGTGCCAGCCGCGTGATCCTCAGTCCCTTCTTGGTCAGATGCACCGACAGCCTCTGTGAGTTTGGAGGCCTGAGCAGCACCCTCTGCCAGTCTCTGCAAGCCTTCGCGACCGCCTGCCAAGCCCGGGGCATCAGGCCTCCCATCTGGAGAAACAGCAGCTTCTGCC
Seq A exon
GTGAGTGTCCCCTCCGGCCACCCCTAGACTGCTCCCAAACCTTCTTTTCATCTGTGTGTGTCTCTCTCTTTTTAAAAATGTGAGTTTGGTACTTCTTTAAAAAAAATTATTTTTATTTTTATTTATCTGGTTGCACCAGGTCTTAGTTTCAGCCTGCTGGATCTTTAGCTGCAGCACGTGGGATCTGGGCTTCCCTGGTGGCTCAGACAGTAAGGAATCCGCTTGCAGTGCAGAAGACCTGGGTTCGATTCCTGGGTTGGGAAGATCCCCTGGAGGAGGGCATGACAACACACTCCAGTATTCTTGCCTGGAGAATCCCCATGGACAAAGGAGCCTGGTGGGCTATAGCCCATGGGGTCGCAAAGAGTCGGACACGACTGAGCGACTAAGCACACACACACGTGGGATCTAGTTCCCTAATCAGGGATCAGGCCCCAGCTCCCCTGCATTGGTAGAGTGGAGTCTTAGCCACTGGACCACCAGGGAAGGCCCCCATCTGTGGAGCCCTGAAAGCTCCTCCATTCTTCTTTTTGGTGTTTCCTGACCTATTTCTGGAGAAGGCAATGGCACCCTACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTGGGCTGCCATCTGTGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGACCTATTTCTGGCCTCATTTTCTCTAATGTGGACCATTTACAGTAAGCTCTTAGCTGGTGCCCCCTATCACAGGATGGCACAGGCTGCTTCTTAGCACTATCATTCCAAAGGATATGTGATCATGTTACACCCGAGAGCCATTGCGCCTGCAAGTCCGCGCTCCTCTCCGCAATGTTTGAGATCCTGTGAGCTGTCCACCCCCACCTCCCCCTGTTCCTTGTGACCGGCATCACCTGCGACAAACCATCCTGTTCCCCACGTGGGCCTCGCTTTCCCACACCCCTTCCTGCCTTCATACACACCCTTCCTTGCACTCCGAAAGTTCTTTCTTCTCCTCTCCTGGCAGATTCCAAGGCATTCTTCTCTAACTCTTTCCTTTAAATTTTTTTTTTTAATTCTTATTCACGTATTATATTCTTCTACCCTTTAAAAGTATACAATTTGGGGATTTCCCTAGTGGTTCAGGAGTTAAGATTCCGCTGCAGGGAATGTGGGTTCGATCTCTGGTCAGGGAACCAAGAGCCCACATGGATTTTCAGTATCTTCACAAGGTTATACAACCAGCACTGCTATTTAATTTCAGGACTTTTAAAATTTTAAAACAATAATGTGTTTTTCGTATGTGCTGCATTCCTATGGTTCAAAATTTTTTAAAGTATTAGAAGATTCCCAGTGAAAAGTCTCTTTTCATCCTGACTCTGGGGCCCAGGCCCAGCCTGCTCTTATCCACATCTGAGTATTTTTCCAAAAGTCTTTTCTATCTGCACATACAAACAAATGCAAATTTATTTCCCATATTTTCTTACCAACAACAGACAGGACACAGTCGTTTGTACCTCATTATTTTTCACTTGGCTGCCCTTCCTGGTCAGATATGTAAAAAGTATCCTTCCTCTCTTTTGCAGACACGTCATAATTCATTTGTCATGGTTTATTTAGCTAGTTTCTATTGATGGACTTCCTAGTTGTTTCCAGTCTTTGGCTATTGTAAGCAGTACTGCGATGCATAACCTTACGCAGATGCAGGTTTCTGTGTATGTGTCTCTTATCTGTAGGATAAATTCCTAGCAGTGGAATTGTTGAATCGAGGATTGTGTGGATTTATGCTTTTGAGAGATCTTGCCAAATGGCCTTCCATAGAGGTTGAGGCATTTACATTCCCACCAGCAACACACGAGACTGCCCATTTCCCCGCAGCCTCGCCAACACAGAGGATTATCATGCTTTTGGAGTTTTGCCAATCTGATAAGTGAAAGATAAAAAGAGTCTTAATTTGTATTTTTCCTATTATGAGTGAGGTTGTGCATTCTTTCATACATTTAGGAGCCGTTTGGATTTCCCTTCCTGTGATTTCTTCCTACCTATTCACCATTTTTCCACTGGTTTGTTGCCCTTTATTGAAATATTTTATAGATGTCCTTTGTCTGCTACAGAGAGTAGCCAGCCCTTCATTAGTGCTATGAGTCAAAAAATTTTTTCCATGTCTTTTTTTTTCATCTTTGGCTTTTTATTTTTTACCATGCAGAACCATATATATATATATATGTATATGTATTTACGAGGTCAGATATAACGGTCTTTGTATTATGGCTTCTGCATTTTGAGGCCCAGTTACAAACGCCTTCCCTACTCTGAAGTTAAAAAAATTTGCCTACATTTTGCCCTAGCATTTGTATGGTTTCTTTTTTCGTATATTTAAATATTTTGATCCGTGGGGATGTATCCTGGTGTGTAGGGTGAGAACTCAATCAACTTCATGTTTATTTTTTCCCAGCATTATTAAATGACCAGTCTCTTTTTCCACTGACTCAGATGTCACATTTTATATTAAATTCCCATGTGTATTTGAGTTCCTCTTTGGGCTTTTTCTCCTCTTCCACTGCTCCATTTAGCTTCATTTACTAGCAACACAATGTTGTGATCATTGAGAGTTTAAGTAGTGTTTAGATTTCTGGCAGGGACATTTAGTTTTTTTTGTTTGTTTGTTTTGGTTTAGAGTTTTCCCAGCTTTTTTGGTTTGTTTATATCCTCATCTCCACTTTAATGTCATCTTTCCCTATTTAAACAAAAAACACAAAATCCTGTTGGTATATTTTATTGCTATCATATTAAATGTACAAATTATCTTAGGGAGGGAATTCCTGGGCAGTCCAATGGTTAGGACTACAGGGTGCGCAGGTTCGATCCCCAGTTGGGGAACTAAGACCCCGAACGTGGCCCCACGCGACCTAATAATGGTAATAAAATTAATTTAGGGAGAACTGACATCTTCATGTTGTGGACTCTTGCTGTCTGTGAACGTTTCCATTTGTTTGCAACTACTTCTGCTCAAAGGGCTTTATTTAGCTCCCCCAGCAGAGTGAGTCCCTCCCTGCCCTGGGCTCCTGTCATGCCAGTACACAGGCCAGTCACATGCTTGCTGACCAGATGCACCAAGGTCACGCTGCACGTGCTGCCCGACTACAGGCTCGCACGCCAAGACGGGAGGACCATTCTTGCTCTATTCTGTCCTCAGGCCCACCATGGAGCCCACGCTCAGTCCACGTTTCTCCCCCACCCTTCCAG
Seq C2 exon
CTCTGGACTGCCCCCCCAACTACGTCTACACCAACTGCTTTCCCCACTGCCCCCCAACCTGCGACAACCCAGAAGGCCGGTGCAAAGGCTCCAGCGGTCCCTCCGTCTGCCAGGAGGGCTGCGTCTGTGAGCCCGGCTACGTGCTCAAGGAGCGGCGGTGTGTGCCCAGGAGTCAGTGTGGCTGCCGGGACGCCCGGGGCAGATTCCTCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432:ENSBTAT00000044014:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=76.5)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.3),PF127142=TILa=PU(17.9=14.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]