DreINT0022891 @ danRer10
Intron Retention
Gene
ENSDARG00000056781 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:26082398-26083165:+
Coord C1 exon
chr7:26082398-26082702
Coord A exon
chr7:26082703-26082956
Coord C2 exon
chr7:26082957-26083165
Length
254 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
GTCTTTCGTTTTTTTTCCAGCTC
3' ss Score
10
Exon sequences
Seq C1 exon
TCTAATTACTTTGTCTCGTTCCACCATCCGCAGCTGCCAACCTGATCCACGACCTGACGACAAACCAAACTGCGACGAGAGTGAAGAAGAAATCTACAAGGCGCAGTGCGCTTCCACTATCCTGTCTGATCGCTTCAAGCCCTGTCACTCTCTCATCCCTCCCGAGGCCTTCCTGGGGAACTGTGTCTATGATATGTGCGAATATAATGGCATGCAGTCGACACTCTGCGATAACGTGGAGGCTTACGCTCAGGCCTGTCATAGCGCTGGAGTCACTATCAGCTGGAGGAACAGCACCTTCTGCC
Seq A exon
GTAAGTGGAAGAGAAACAGAGAAGTAAAGTAATGCTGAGCTGGCTGACAGGAGGAAGAATCATTTGTGAAAATGAAACAGAGCCCAAGTTTTATGCAGATGAAATTAAGCATTTATGAGATTCTCAGTTGATAACCTCCAGGCATCATATAAATATTAATGGATTTTTCTGCACATTTTAAATGTGTCTGAATATGTCAGAAAATCATTTCTATTCGGATTCAGTGTTTTAAATGTCTTTCGTTTTTTTTCCAG
Seq C2 exon
CTCTCCCGTGCCCACCCAACAGTCACTACTCTGAGTGCACACCTCCATGTCCTCCTACTTGTGCTGACCTCTTCCCCATTTTCTGCCCATTACCACCCAATAGCTGTGTTGAAGGCTGTCAGTGTAATGCAGGTTTTGTGCTAAGTGATGGCAAGTGCGTTCCTCTCTCAAGCTGTGGATGCGTTGACAGCAATGGAGAGTATCACGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056781:ENSDART00000159818:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=70.9)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.0),PF127142=TILa=PU(17.5=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGACAAACCAAACTGCGA
R:
GACATGGAGGTGTGCACTCAG
Band lengths:
302-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]