BtaINT0061720 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005261 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr18:49734530-49736300:-
Coord C1 exon
chr18:49735727-49736300
Coord A exon
chr18:49734730-49735726
Coord C2 exon
chr18:49734530-49734729
Length
997 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CCCTGCTCCTTTCTCTGCAGCGC
3' ss Score
11.51
Exon sequences
Seq C1 exon
GTTACTGTGGATGGTGAGGCCGTAGCCCTGCCCGTGGCTGTGGGTCACGTGCGGGTGACGGCGGAGGGCCGGAACATCGTTCTGCAGACGACCAAGGACCTGCGGCTTCTCTTTGATGGCGACGCCCACATCCTCATATCCATCCCTTCCCCCTTCCGCAACCGGCTCTGCGGGCTCTGTGGCAACTTCAATGGCAACTGGAATGATGACCTTGATCTGCCCAGTGGCACCACGGCCCCCAGCGTGGATGCCTTTGGAGCTGCATGGCGGGCACCTGGCTCCTCCCAGGGCTGCAGCGAGGGCTGTGGACCCCAAGGCTGCCCTGTGTGCTCAGCAGAGCAGACGGCACCATACGAGAGCCTCGAGGCCTGTGGGCAGCTCCGGGATGCCAACGGCCCCTTCTCAGCCTGCCACGCGGCGCTGAGCCCCTCTGAGTACTTCCGCCAGTGCGTGTATGACCTCTGTGCCCAGAAGGGCAACGTCACCTACCTCTGCCGCAGCCTGGCAGCCTACACAGCGGCCTGCCAGGCGGCCGGCATGGCTGTGAAGCCTTGGAGGACAGACAGCTTCTGCC
Seq A exon
GTGAGTGTCTGGGGACCCCTGGGAGGACTCCGGCTCGGGCTCGGGGCCCCCTGTTCTGTCTGCATCTCAGGGGCAGGGCCCCAGTTCCTCCCTTAGCACACTCTGCTCCTGGCTTCACTCCTGCCCGGCTGACTGGCCCTTCTCAGACTCCTTTCAGGGGCCCGCTCTCCTGAAACCTTCTCTTACAGTTCTCAGGGCCCTTCCTGGACATCTGTGGTGATTTGGGAGGGTGGGTCGGACAGGTCAGGAGGTCACACAGTAAAACTTGAGTCTCACCCAGGCCCCCGCCCTACCCCCGCCAAGATGGGACCATCACCCCTTAGATCCTTCAGGACAAGACTGCAGGCTCCTCAGACTCCTAGCCCAAGACCTCTTAGCTAACCTCCAGTCAGGGCTTATCTGTTTCCTTCAAACCCCCAGGACAGGGCTGTGTTTCCTTAGACTCTCCTGGACACAGCAGTGGCCACTCATGACCCCAGGCCCGAGCTGTGTCTCCTTCATTCTTCTCAGGGCAGGACCTACACGCAGGCAATGGACACTGTCTGTCTCCCTCTCTGACCTCTCTCCTGACTGCCAGCCTCATGGGTCTAGTGACCTCCTGAGCATTTTCCACTAGGTGACCTTAGGGGGCCCTCACACACCTCCTGTGTTCCCATGTGACATCAGCATTTCACCCCAAACATAATCTTCTTATTTTTCAACCTTGATCGTCATCTCAAGGCAGCCACACCATCCACCCGTTGCTTAGCCAGAGCCCAGGCCCTCACTATGCGTGCTTCCCCTGGGTCCTCACAGCTCCCATCCTGGCCCTGACCTTCTGCCTGTATTTCCCCCGATCACACTGGACCATCACAGTCTGTCCCACTGACATGAGCCCCACAGGGCAGGGGCTGGAGCTGTGTGTCCCCAGCACCGGCAGCTCAGATCCAGGTGTGCAGCGGGTCCTGTTCATTTCTCAGTGAGCAGCCGTGACCCCACCCTGCTCCTTTCTCTGCAG
Seq C2 exon
CGCTCCAGTGCCCCACCAACAGCCACTACTCCGTCTGCACACGCTCCTGCCAGGGCTCCTGCGCGGCTCTCTCTGGCCTCACGGGCTGCACCACCCGCTGCTTTGAGGGCTGTGAGTGTGACGACCGCTTCCTGCTGTCCCAGGGCGTCTGCATTCCTGTCCAAGACTGCGGCTGCACCCACGATGGCCGATACTTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005261:ENSBTAT00000006924:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(51.4=39.6),PF087426=C8=WD(100=39.6)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(16.4=13.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGAGTACTTCCGCCAGT
R:
CAAGTATCGGCCATCGTGGG
Band lengths:
344-1341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development