DreINT0010737 @ danRer10
Intron Retention
Gene
ENSDARG00000076830 | FCGBP (1 of 2)
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr5:41230482-41231493:-
Coord C1 exon
chr5:41231188-41231493
Coord A exon
chr5:41231075-41231187
Coord C2 exon
chr5:41230482-41231074
Length
113 bp
Sequences
Splice sites
5' ss Seq
GCCGTTAGT
5' ss Score
-2.68
3' ss Seq
TTAATATGGTCTCTCCACAGCTA
3' ss Score
10.36
Exon sequences
Seq C1 exon
GGAAAGTCAAGGATGATCCTGGATGTTCAGATGCATGTCAGGGAAAAGCATGTGCTTCATGTGATGTTGCAGAGAGAAATAAAGACACTTTTACAAAGCCTTGCAGCAAGATCACTGACAAACAGGGACCTTTTAAAGGCTGCCACAGTAAAGTGAATCCAAATCTGTTTTATGAGGATTGTGTGTATGATATGTGCATGTACGGTGGCCATTCAACAGCCCTCTGTAGTGCTCTTACTGCATACACAGCTGCTTGCCAACATGCGCTTGGTGCCGTGGAGTCCTGGAGAACTGATAGTTTTTGCC
Seq A exon
GTTAGTATTAATTTATTTATTGCTCAATTCAAATATCTTAAACTACTCATTAAGTTTATAAGATGTTTTTTTACTTTTCATTAACAATATTCTTTAATATGGTCTCTCCACAG
Seq C2 exon
CTACAACCTGTAAGGCACACAGCCACTATGAGGTTTGTGCAGCGGGATGTCCACAGACCTGCAGTGGTCTTACCGAGCCCAAGAGTTGTAAAGGCACACTCTGTACTGAAGGCTGCACATGTGACAAGGGCTTTGTCCTTAGCGATGGTGAGTGTGTGGCTGCACAGCAATGTGGCTGTACTTACAAGGGCCAGTACTATCAGTTGGGCCAAGTGTTCTTCCCTCAAGACAAGTGTCTCCAGAGATGCACCTGCAAAGAGAATGGAAAAGTTCAGTGTGATGATGGGTTCACCTGCAAACCCAATGAAAAGTGCCAGATCCTGAATGGAGTACAGGGCTGTTTCCCAGATGGCAAAGCAGTTTGTTCAGTGTCAGGATTTGGGCTTTATCAGTCATTTGATGGAAAGTCCTTCAGTGTTCAAGGAGATTGTGAGTATAGGTTGGTTGAAGCAGTTCAGATTCAGGATGTAAAGAGCTCTTTCAGTGTCTTAATAAAACAACAGTCCTCTGAGATGGTCTTCACTCGAAAAGTTGAAATACAGTTACAGCAATCCACAATTACTTTGCTGCCCGGCCACATCTGGGAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076830:ENSDART00000134326:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(47.8=39.8),PF087426=C8=WD(100=39.8)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.8),PF127142=TILa=WD(100=28.8),PF0009420=VWD=PU(49.4=38.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACGGTGGCCATTCAACAG
R:
AAAGCCCTTGTCACATGTGCA
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]