HsaINT0063159 @ hg19
Intron Retention
Gene
ENSG00000090920 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:13572]
Coordinates
chr19:40360856-40363291:-
Coord C1 exon
chr19:40362718-40363291
Coord A exon
chr19:40361056-40362717
Coord C2 exon
chr19:40360856-40361055
Length
1662 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CCTGCCTCCTCTCTCTGCAGCGC
3' ss Score
13.08
Exon sequences
Seq C1 exon
GTCACCGTGGACGGCGAGGCTGTGGCCCTGCCTGTGGCTGTGGGCCGCGTGCGGGTGACCGCCGAGGGCCGAAACATGGTTCTGCAGACGACCAAGGGGCTGCGGCTTCTCTTTGATGGCGATGCCCACCTCCTCATGTCCATCCCCAGCCCCTTCCGTGGACGGCTCTGTGGCCTCTGTGGGAACTTCAATGGCAACTGGAGTGACGACTTTGTCCTGCCCAATGGCTCAGCAGCGTCCAGTGTGGAGACCTTCGGGGCTGCATGGCGGGCGCCCGGCTCCTCCAAGGGCTGTGGCGAGGGCTGCGGGCCCCAAGGCTGCCCAGTGTGCTTGGCAGAGGAGACTGCACCCTATGAGAGCAACGAGGCCTGCGGGCAGCTCCGGAACCCCCAGGGCCCCTTCGCGACCTGCCAGGCGGTGCTGAGTCCCTCTGAGTACTTCCGCCAATGCGTATACGACCTGTGCGCGCAAAAGGGTGACAAAGCCTTCCTGTGCCGCAGCCTGGCAGCCTACACGGCGGCCTGTCAGGCAGCTGGCGTGGCCGTGAAGCCCTGGAGGACAGACAGCTTCTGCC
Seq A exon
GTGAGTGTCCGTGGGTCCCTCGCAGGACTCTAGACCAGGTGTAGGGGCCCCTCCTGGCCCATTCCTTCTATTTGCATGTCGGAGTGGTTTCTCCCTGTAAAAGCGCTCCCTCCCCACCCCCTCCCACCCCACACCCACACAACTTCTTCTCCCACGGCATAGTCCACTGGCTTCCCTGCTATCCCTCTGACTGTTCCTTCTCAGCCTCCTGTCTGGGCCCACTCTGCTCAAACCTCAAATTCTCTTCTTCCCTAGTGTTCTATTCTGGACTCTTTCTGCAGTGACCTGAAAGGGAGAGTTGGATGGGTTGGGAGATCTGTGGCTCACACAGACCCTCCTTCTACCCCCGACAAGACCATATCCCCTCAGATCCCCCCAAGACAAGGCTGCAGGCTATTAAACACCCCGCTAAACTAGGACTGTACCTCTCATTCAATTCCCCATGGGAGGGACATCACCAGAGACTCTCAGGAAAAAGCAATGGCCCCTTCGGCTCCAGGTCAGAGCCAGGTCTCCCCTGGGCAGGACCTATACCCAGGGCGGTCATCCACACCCGCGGCCTTAGATTTGTTCTCATTGTTGACCATGGACCTGGTCTGTCTGTCTCAAGCCCTGAACTCTCTCCTGACTGTCAGCCCAGTGATCCTGATTTCTGACTTCTGGCCTTCAGAACTGTGGGAGAATGAATTTCCCCTGTTTAAGCTACAAAGTCTGTGGTAATTGTTAGGGTGTCCAAGACACCTTCCCCTGGGTGTCCTTACCGTCCCTCTTACCTGCTGTGTTCCCAAATAAAATCAGCATTTCACCCCCAGCCTGATGCTCCTTCCCCAAACCTGGTGGGCATTGCAGAACAGCCACACCTCCACCAATTGCTTAGCCAGAGACCAGGGACTTACCACAGATAATTCCCTTGGGTCCATATAGCCCCTGTCCCAACTCTGACCCCTCTGCCTGTGCCCCCCTATCCCAGCCCTGACCCCTTTGCCTGTGCCCCCCACACCCTGGCCCTGACCCCTCTGCCTGTGCCCCCTACCCAGCCCTGACCCCTCTGCCTGTGCCCCCTACCCCGGCCCTCAACCCTCTGTGTGTACCCTCCCCATCCCGGCCCTGACCCCTCTGCCTTTGCCCCCCCACCCCAGCCCTGACCCCTTTGCTTGTGCCCCCAACCCCAGCCCTCAACCCTCTGTTTGTGCCCTCCCCATCCTGGCGCTGACCCCTCTGCCTGTGTGCCCCCACTCTGGCCCCGACCTCTTTGCCTGTGCCCCCGACCCTGGTCCTGACCCCTCTGCCTGTGCCCCCTACCCTGGCCCTCAACCCTCTGTCTGTGCCCTCCCCATCCCAGCCCTGACCCTTCTGTCTGTAGCCCCCTACCCTGGCCCTGACCCCTCTGCCTTTGCCCCCTCATGCCTGCCCTGACCCCTCTGCCTGTGCCTCCCCACCCTGACCCTGACCTCTCTGTCTACACTCCCTGATGCAGCATGTTCACTTTGGGCTCTTCCTGTCTGTCCCACTGGAAGTGAGCTCTGTAGGACTGGGGTTGAGACTTTTCTCAGTATTTGTGTCCTCAGCACCGCCTAAAACAGGGCTGGGTGTGCAGTAGGCCCCCTTGGTTATCCAGGACCCTTTGGAGGTGTGACTCAGCCCTGCCTCCTCTCTCTGCAG
Seq C2 exon
CGCTCCATTGCCCCGCCCACAGCCACTACTCCATCTGCACTCGCACCTGCCAGGGATCCTGTGCGGCTCTCTCCGGCCTCACGGGCTGCACCACCCGCTGTTTTGAGGGCTGTGAGTGCGACGACCGCTTCCTGCTTTCCCAGGGTGTCTGCATCCCTGTCCAAGATTGTGGCTGCACCCATAATGGCCGATACTTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090920-FCGBP:NM_003890:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(51.4=39.6),PF087426=C8=WD(100=39.6)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(16.4=13.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCCTATGAGAGCAACG
R:
ACTCACAGCCCTCAAAACAGC
Band lengths:
348-2010
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)