HsaINT0063159 @ hg38
Intron Retention
Gene
ENSG00000275395 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr19:39870216-39872651:-
Coord C1 exon
chr19:39872078-39872651
Coord A exon
chr19:39870416-39872077
Coord C2 exon
chr19:39870216-39870415
Length
1662 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CCTGCCTCCTCTCTCTGCAGCGC
3' ss Score
13.08
Exon sequences
Seq C1 exon
GTCACCGTGGACGGCGAGGCTGTGGCCCTGCCTGTGGCTGTGGGCCGCGTGCGGGTGACCGCCGAGGGCCGAAACATGGTTCTGCAGACGACCAAGGGGCTGCGGCTTCTCTTTGATGGCGATGCCCACCTCCTCATGTCCATCCCCAGCCCCTTCCGTGGACGGCTCTGTGGCCTCTGTGGGAACTTCAATGGCAACTGGAGTGACGACTTTGTCCTGCCCAATGGCTCAGCAGCGTCCAGTGTGGAGACCTTCGGGGCTGCATGGCGGGCGCCCGGCTCCTCCAAGGGCTGTGGCGAGGGCTGCGGGCCCCAAGGCTGCCCAGTGTGCTTGGCAGAGGAGACTGCACCCTATGAGAGCAACGAGGCCTGCGGGCAGCTCCGGAACCCCCAGGGCCCCTTCGCGACCTGCCAGGCGGTGCTGAGTCCCTCTGAGTACTTCCGCCAATGCGTATACGACCTGTGCGCGCAAAAGGGTGACAAAGCCTTCCTGTGCCGCAGCCTGGCAGCCTACACGGCGGCCTGTCAGGCAGCTGGCGTGGCCGTGAAGCCCTGGAGGACAGACAGCTTCTGCC
Seq A exon
GTGAGTGTCCGTGGGTCCCTCGCAGGACTCTAGACCAGGTGTAGGGGCCCCTCCTGGCCCATTCCTTCTATTTGCATGTCGGAGTGGTTTCTCCCTGTAAAAGCGCTCCCTCCCCACCCCCTCCCACCCCACACCCACACAACTTCTTCTCCCACGGCATAGTCCACTGGCTTCCCTGCTATCCCTCTGACTGTTCCTTCTCAGCCTCCTGTCTGGGCCCACTCTGCTCAAACCTCAAATTCTCTTCTTCCCTAGTGTTCTATTCTGGACTCTTTCTGCAGTGACCTGAAAGGGAGAGTTGGATGGGTTGGGAGATCTGTGGCTCACACAGACCCTCCTTCTACCCCCGACAAGACCATATCCCCTCAGATCCCCCCAAGACAAGGCTGCAGGCTATTAAACACCCCGCTAAACTAGGACTGTACCTCTCATTCAATTCCCCATGGGAGGGACATCACCAGAGACTCTCAGGAAAAAGCAATGGCCCCTTCGGCTCCAGGTCAGAGCCAGGTCTCCCCTGGGCAGGACCTATACCCAGGGCGGTCATCCACACCCGCGGCCTTAGATTTGTTCTCATTGTTGACCATGGACCTGGTCTGTCTGTCTCAAGCCCTGAACTCTCTCCTGACTGTCAGCCCAGTGATCCTGATTTCTGACTTCTGGCCTTCAGAACTGTGGGAGAATGAATTTCCCCTGTTTAAGCTACAAAGTCTGTGGTAATTGTTAGGGTGTCCAAGACACCTTCCCCTGGGTGTCCTTACCGTCCCTCTTACCTGCTGTGTTCCCAAATAAAATCAGCATTTCACCCCCAGCCTGATGCTCCTTCCCCAAACCTGGTGGGCATTGCAGAACAGCCACACCTCCACCAATTGCTTAGCCAGAGACCAGGGACTTACCACAGATAATTCCCTTGGGTCCATATAGCCCCTGTCCCAACTCTGACCCCTCTGCCTGTGCCCCCCTATCCCAGCCCTGACCCCTTTGCCTGTGCCCCCCACACCCTGGCCCTGACCCCTCTGCCTGTGCCCCCTACCCAGCCCTGACCCCTCTGCCTGTGCCCCCTACCCCGGCCCTCAACCCTCTGTGTGTACCCTCCCCATCCCGGCCCTGACCCCTCTGCCTTTGCCCCCCCACCCCAGCCCTGACCCCTTTGCTTGTGCCCCCAACCCCAGCCCTCAACCCTCTGTTTGTGCCCTCCCCATCCTGGCGCTGACCCCTCTGCCTGTGTGCCCCCACTCTGGCCCCGACCTCTTTGCCTGTGCCCCCGACCCTGGTCCTGACCCCTCTGCCTGTGCCCCCTACCCTGGCCCTCAACCCTCTGTCTGTGCCCTCCCCATCCCAGCCCTGACCCTTCTGTCTGTAGCCCCCTACCCTGGCCCTGACCCCTCTGCCTTTGCCCCCTCATGCCTGCCCTGACCCCTCTGCCTGTGCCTCCCCACCCTGACCCTGACCTCTCTGTCTACACTCCCTGATGCAGCATGTTCACTTTGGGCTCTTCCTGTCTGTCCCACTGGAAGTGAGCTCTGTAGGACTGGGGTTGAGACTTTTCTCAGTATTTGTGTCCTCAGCACCGCCTAAAACAGGGCTGGGTGTGCAGTAGGCCCCCTTGGTTATCCAGGACCCTTTGGAGGTGTGACTCAGCCCTGCCTCCTCTCTCTGCAG
Seq C2 exon
CGCTCCATTGCCCCGCCCACAGCCACTACTCCATCTGCACTCGCACCTGCCAGGGATCCTGTGCGGCTCTCTCCGGCCTCACGGGCTGCACCACCCGCTGTTTTGAGGGCTGTGAGTGCGACGACCGCTTCCTGCTTTCCCAGGGTGTCTGCATCCCTGTCCAAGATTGTGGCTGCACCCATAATGGCCGATACTTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000275395:ENST00000616721:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(51.4=39.6),PF087426=C8=WD(100=39.6)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(16.4=13.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCCTATGAGAGCAACG
R:
ACTCACAGCCCTCAAAACAGC
Band lengths:
348-2010
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development