MmuINT0063653 @ mm9
Intron Retention
Gene
ENSMUSG00000047730 | Fcgbp
Description
Fc fragment of IgG binding protein [Source:MGI Symbol;Acc:MGI:2444336]
Coordinates
chr7:28891940-28899146:+
Coord C1 exon
chr7:28891940-28892513
Coord A exon
chr7:28892514-28898946
Coord C2 exon
chr7:28898947-28899146
Length
6433 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
ACCTTGCCTCTTCCCCACAGCTC
3' ss Score
11.54
Exon sequences
Seq C1 exon
GTGACTGTGGATGGTGAAGTCGTGACCCTGCCTGTGGCCACAGGCCACGTGAGTGTGACAGCCGAAGGCAGAAACATAGTTCTGCAGACAAACAAGGGAATGAAGGTTCTCTTCGATGGCGATGCCCACATCCTCATGTCCATCCCGAGTTCCTTCCGTGGACGTCTCTGTGGCCTCTGTGGGAATTTCAATGGGAACTGGAGTGACGACTTTGTGCTGCCTAGTGGAGCAGTGGCCCCCAACGTGGAGGCCTTTGGAACCGCATGGCGAGCTCCCGGCTCCTCCTTGGGCTGTGGTGAAGGCTGCGGGCCCCAAGGCTGCCCAGTGTGCTTGGCAGAGGAGACACAAGCATATGAGAAAAATGATGCCTGTGGGAAGATCCGGGACCCCCACGGCCCCTTTGCAGCTTGCCACAAGGTTCTGAGCCCCTTGGAATACTTCCGCCAATGTGTGTATGACATGTGTGCCCATAAGGGTGACAAAGCCTATCTCTGCCGTAGCCTGGCTGCTTATACTGCAGCCTGTCAGGCAGCTGGGGCAGCAGTGAAGCCCTGGAGGACAGACAGCGTCTGCC
Seq A exon
GTGAGTGTCTCTGACCCCTTGGGTGACCCCTGTCCCTCCTTCCCTGTCTGCTACCCAAGAGAACTCCCTGCCTGTAACAGGGCCTCTTCCAGCCCTGCCCTGCATCCTCTATGGCTTTCCTCCTTTCCTTCTGGCTCTGGGGTCTCAGACTCCAGTCAAGAGTCCACACTCCCCAGCCCTGAAGTTCACCTTTTCCCGGGGCTGTTCCCAGCTCTCTCCATACTGACCTGAAATGGAGGTGGCTGGGTTGAGAGCCCACAGGAGACCTGAGTCCTGGCCCTTCCCACAGATCCCATGTCTTCTCACATACTCAGAACAATGCCACGGCACAGGCAAAAGACCTCCCTAATCTAGGACCACACACCTCTTTTCAAATTCCAGGGCAGGAATAGGTCACCTCAGACACATGACAAGACTGTAGCCACTGACACTGGCTTTATGGAAGAGCCACTTCTCTTCCAGTCTCTTGAGAGCAGAACCTTGACACGGAGCCATACTGTAACATAGCAACTGTCCCAATGACAACAGTAGACCCTGTCTCCTCTTCTGAGCTTCCTCTTGAGTACCAGGCCTGTGTACCCATGGCCTCCTGGGAAATTTCCCCTGTGATCTATTTGAATCCAACATCCCATCCCAAACCTGATTCTTCTCCTCTATCCCAGTGCCTATTTGATGACATCCACACCATCCTGGAATTACTTAGCTAGAGCCTAGCATTTTGCCTGGTTTTCCACTGTCCTTACCTCAGCCCTCTGCCTGTGACTCCCCATCCCATTCAAGCCTCTATCTGACTTTCTCAGAGAACCATGATCACTTTAGCTATAGCTGTTTATGGTGCAAACCCTTTTTCTTCAGAGCCTGTGGTCTCTGCAACATTGTGTGTTAGGTTTTGTGGCAAAGGCTTGAAAGAAACAGTTTTTGAGTGTTTCTGTTGCCTGGAGGTTTCAGACACTTCTGTTCAAGGTAACTGAATGCACTCTGGGGCCTGAGGTCAGACACATTGTAGCAATGTGTCCCTTTACTGCAGCTAGGGAAGATGGTGACCACAGAGTCAGGCACGGAGAAAGAAGGGAGGAGCAGGCAATAGATACCCTTGCAAGGCCCATTCTAGCCGACCTGGTTTGTACGACCAATCCCAAACTCCAAAACTATCCATTATTTTTGGAGTAATGCCATATGTTTCCATCCATGGATTAGTCATTGGTAGAGTCAGATCATCTATGACTCAAGTACCAGTCAATGATTCAACCACCAAGGAGACTAAGTCTTCACCATATGAGTCTTGGGGAAAAGTGTTCATCTCCAGGTCACTACATTCCACCCTTGATCCCAACGGACTCCTATCTGCATGATAATAAGAATTGCATCCAATTTATTTCCCGGAGTCCGCAAAACCTTTATAGTTCCCAGATTGCTTAAATGTCTGAGTCCAGAGTGTTTCCCAAAATGAAGTGAAGACCCTTCGATGTGAGCCTCTGCAAACATAAAAATACAATTCTATATGTCCAGCACCCAATGGTGTAATATGGTACACATTCCTACACTAAAATGAAAGGCTGGACACATATAAGGGAGAGATGGGACCAATGTAAGATCAAATCCCAGCAGGGGAAATACTGGCACAGTGTAAGCAGCAAAGAGCCTCTAGCCTCTACACCCTGCCATCTACAAGCTTCATGGCCTCCCTCTCTTGCTTCTTGCCTGCTGTTCCCCCACCCCACCCCCACCCCTGTTCCACATCCTTGCTTTCTGTAACTCCCTGGCATTCTTAACTCCATTCTTACAATTCATGATCCTATCCCCGCTACACTTTGCCTGGTCCCTCAGGGATATTCTTGAAATCTGGGTGAAGCCACTGAGCCCCATCACTCTTACACTGTACATCCCCACAAACTCACCTCCATGCAGACAACTTCAGCGTCTGGCACCAGCTCAAGCAGTTGTCAGCCGTCAGCCTCCCTTGACCATGTCTGCAGTGGTCTCAGAGTGCCTGGACGGGTGAGCACGGTGAGATTAACTCTGCGGAAACAACATCTAGGTCCTGTAAGAGTGAGGTGTCCCAGTTGCCCTGTTTCCTCAAGGGAACAAAACCTTTCAAGTTCATAGTTCCTGTCGCGCCCGCTCTCGACCAGCAAGAACGACGCGACCACCAGTCCTTCTAACAGCAGTTTATTCAGTCTTCATCTTTCTTCTTTCTCTTCATCAGTACCGTTCCCCAGGTGAAGAGTTCTGAATCCACGCCGGATCCTTCTCAACAGTCTGTTTTACAGGAACACTTCATTAACCCCTTCTTCCCCGTTATGCAGTTCTGAATCCTCCCTGTAGCAGGGGGTCTTCACTCATGCCTGAAGATGTTTCTTTTCCCAGGTTTTCTCGTCCCAGGTCTTCTCGTCCTAGGTCTTCTCGTCCCGTCCCGGGTCTCAGCACCAACTGTTACCCGCGTTCGCCCAACTGGCCAGGAAGAACGACGCTGCTACAGGATCCTTCTGCACACGTTTATTCAGTCCTGTTTCTTCTTGTTTATATCTCCCTTGTTTATATCTCCCTTGTTTATATATCTCCCTTGTTTATATATCTCCCTTGTTTTTATATCTCCCTTGTTTTTATATCTCCCCCGTTTATATCTCCCCTGTTTATATCTCCCCTGTTTATATCTCCCCCGAACCCTGGGCCTCTCACTCTTTTATACTCTCAGTTCCCATCCACGCACAGCAGGCCATGCCACCTCACCAGGCACGCAGCTTCAGCTAATCAGGGCAGCAGGGGCAAATCTCCACCAAATTGGATTCACCTGTATCCTGGTGCACCTGCGCAGCACTCAAGATGTTTGTGTCTTGTATGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTGCAGTCCCTGGCGCCTTTGGGACTGCCGCCACACCTGCTCCCCACAATTCCCCCTTTTTTCTTTTTTGGCAGAGAGAATGTCTGTAGATAGCCCCTCGCAACCATGCCCCTTACCCGTCTTTGGGAGACAAACAGCATTGGTTTGATCCCTGTCTTAGGTTGGTGACATGCCCAGGGAGTCTTATCACTGACTACCTCTCAATCATGCCAAGCCACACCTGGGGAGATTTTGTTTTGCTTGTGGCAGGTGCATCAAAAGGCCAGGATGTTGATTAATCTATGGCCAGATCTTAATTGCTGCAAGCAAGCCTCATGGGTGAAGGTAGAGGTCTGATCCCCAGTGTGCAAGCATAGGGGCCCTACACAAAACCATCCCTTAGGCTCATCACCCAGAGAGGTCTTGGCCAGCTCCCGTGTCGTTTTTCCTGAGGGAAGGGAACTAGGACACTGAACCTTCATGCAATCAGACATGCCTTCCACAGGATGCCAACAGCAAGCTATCCTCTGTGCAGTGCTTAGCCTCGCACCCCACGGCATAACGCAGCATAATTTCTTTTAGAGGGGCAAACCGAATCTGAGGAGATTGTCCTGCCTCCACTGCAGCAAAAGCCTATGCTACCATGGTGAGAGTGCGGGCCGCACACTCTGCACCTAACACATGTGCCAAACACAAAACACACACACACTATAACAAGCATACATCCCAGGGCTCTCATCCCCGCTCATCTTCTCTGAAGCAAGGGATAGATAGCCAGAGGGGCTATCTCTTTAAGGGAAATTCAGGGATCAAAAAGCGTGGAAAAATTTGAATGTCATGTCGAGCTGGTATCGGCTTCTGGAATACCGAAAGGATCTCCCATCTCGGCTCCATCCCTTATGCTTGTGGGATCATCCACCACATCCACAGGGGCAACTGGATCAGGAGCCTCATTCTTGCAGCGTCTCACCAATCTCTCCGGCACCCAAAGAGGTTCTGTCTGGTCCTGTGGAAACACACAAACAGACCCTCTCGCCCACGTCAACACCTGATCCTGTCGATCCTCTCCAAATCTCCGGACAGAAGGTCCACCTACAGGTGGCTGCTGAGGAGGCATAGGGAGGCGGCACAAAAGCTAATTCGCCTTCCTCCTCCACCTCGGCTCTTTTGTTTTGTCCTTTCTGTCCACCTGATAACACTGTGTCTCCTTTCTTTTTCTTTTTTCTTTTTAAGCCCTTTTCCTCTTCTGACATACTTTCTTGTTGCTCTATAAGGATTTTCTGACCTGTCTTGACTGCCTCTACACACAGTTTCAAACAGTAACAGAGTCCATATATCAGAACAAACAAGACCAAAACTATCAGACCTACCCACAAAGGGTCAATGGGAGAAAAAAGCATAACTACACAGTGAGGATCTATTGATCACTACACTGAGGTTATCATAGTTCCTTAACTTGTCCCCAAACCGGGAACCTTAACTTGTCCCAAAACCGGGAACGTATCGTTACTTTGTGCCTGCTTCCTGGCAACTTTATGCTTGCCTCTATTTTATCCGAGGTCCTTCCCAAACTCCTGGGGTTGCAAGTTTCACTCACCGTGAACTTACCCTGCCAGCAACCACTGACTGCTGAAAGTTCTGAACTCGGTGGGGGAGTCGGTTCCCCGTACGGGCCACCAATTGTCGCGCCCGCTCTCGACCAGCAAGAACGACGCGACCACCAGTCCTTCTAACAGCAGTTTATTCAGTCTTCATCTTTCTTCTTTCTCTTCATCAGTACCGTTCCCCAGGTGAAGAGTTCTGAATCCACGCCGGATCCTTCTCAACAGTCTGTTTTACAGGAACACTTCATTAACCCCTTCTTCCCCGTTATGCAGTTCTGAATCCTCCCTGTAGCAGGGGGTCTTCACTCATGCCTGAAGATGTTTCTTTTCCCAGGTTTTCTCGTCCCAGGTCTTCTCGTCCTAGGTCTTCTCGTCCCGTCCCGGGTCTCAGCACCAACTGTTACCCGCGTTCGCCCAACTGGCCAGGAAGAACGACGCTGCTACAGGATCCTTCTGCACACGTTTATTCAGTCCTGTTTCTTCTTGTTTATATCTCCCTTGTTTATATCTCCCTTGTTTATATATCTCCCTTGTTTTTATATCTCCCTTGTTTTTATATCTCCCCCGTTTATATCTCCCCTGTTTATATCTCCCCTGTTTATATCTCCCCCGAACCCTGGGCCTCTCACTCTTTTATACTCTCAGTTCCCATCCACGCACAGCAGGCCATGCCACCTCACCAGGCACGCAGCTTCAGCTAATCAGGGCAGCAGGGGCAAATCTCCACCAAATTGGATTCACCTGTATCCTGGTGCACCTGCGCAGCACTCAAGATGTTTGTGTCTTGTATGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTGCAGTCCCTGGCGCCTTTGGGACTGCCGCCACACCTGCTCCCCACAAGTTCCCCTTTTCAGACTATGACAGCTATGTCTTGATGATTCTCAAGACACCTTCAAATCATGGTTCCTGTTGTCCAAGTGCAACATACCTGGCTTTCTTCTGGGACCTCTGATCCCTTTAGAAAGGGATCGTGCCTTTTTAGCCCTAAATACACAGGCTCTTTCTGACCAACCTACAAGTTTGTCAAATATTTATGCTCTGATTTTGTTCCTGATCCCGACTACAAACCTGACTAAACCCAGCCAGGAACACTATGCCACAAGCTGAATGCTGTGCTGCCCTGATGTCCTCTGGCCTATTGATGAGGTTACTTCCTTTGTCTTAGATGACTCTGGACATGGGCAAAATATAGACAAGCTTGTTGGCATGTTGTGACACCAATGGACGATACTCCAGTTTCCAAGAGCCTTGTTTTACCCTTGAAGCCCCTCAAGTACAACCTGAAACCTTGTTGGCCTTCTGTTCTGGGCTCCCACCAGAACTCACAGGAAGCCCCACTCACAGCACTTGAGGTTTTGTTAGCCCAATTCCCCAAACACCTCCCAGAAACCATTGTTAAAAACACATGAGACACATAGCCAGGAAATCACAGCACAGAGCTCCCATCTCCTTAGCTGTGTTAGTTCCTCGTGGGCCTGAGTAATGCCTGGAAATCTGAAAAAGAGGGCATCTCTGATGTGGTTTGTGATCACACAGGTTTCTGTGTGGGGCTGACTTGCCTGTTAGTGAGGCTTGTGCTGAAGCAGATCAGAGGAGAGGGGACACAGAGAACAAAGGCGTTCATCTCACAGTGGCCAGGAATCAGTAAGAGAAAGGCCTGGAGCAAGAGGGAACCCTAGTGACTTACATAGGACAGACACCAAAGGCTTTACAGTCTCCCAGTACTCTCTGCAAACATGAATTCATTGAATAGGTTAGAGGCCTCTCAGACGTCACATTCAGCAGCTGGAAACCAACTGGGTATTTTCTGGGGTGCAGAGGTCAGAAGAGGGAGCACTGCATCCAGACTACAGCAGTCCCTCATCCCAGTCCCTCATCCCAGGCCTGAGATCCAGTAGATCCAGGTGGCCAACATCTTACATAGGACCCACCTTGCCTCTTCCCCACAG
Seq C2 exon
CTCTCCAGTGTCCTGCCCACAGCCACTACTCCATCTGCACCCGCTCCTGCCAGGGCTCCTGTGCTGCTCTCTCTGGCCTCACTGGCTGCACCACCCGCTGCTTTGAAGGGTGTGAGTGCGATGACCACTTCCTGCTCTCCCACGGTGTGTGCATTCCTGCCCAGGACTGCGGCTGTGTCCATAACGGCCAATATATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047730-Fcgbp:NM_001122603:16
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(51.4=39.6),PF087426=C8=WD(100=39.6)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(16.4=13.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: