DreINT0010752 @ danRer10
Intron Retention
Gene
ENSDARG00000098278 | FCGBP (2 of 2)
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr15:36519971-36523331:-
Coord C1 exon
chr15:36522773-36523331
Coord A exon
chr15:36520174-36522772
Coord C2 exon
chr15:36519971-36520173
Length
2599 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
CATTTGTGTTTTCTTTTTAGCCG
3' ss Score
8.74
Exon sequences
Seq C1 exon
GTAAACAATGAGAGTGTCAACCTCCCTTCATCTCTTGACCATATCACCATTAGCCAAGTTGGATTCAACATCATAATCCAAACTGATTTTGGCCTGAGAGTTCAATATGACACCGGTTACCATGCAGAAGTCCATATTCCATCAAGCTATCAAAACAGCACTTGTGGCCTGTGCGGCAACTACAATGGCAACCCGTCAGATGACTTCATGTTGCCTAATGGGACCCAAAGCTCCAGCGCAGAGACATTCGGACAGGCGTGGGCATTGAAAACAACTAGTGTTCAATGCGTAGGTGGAAGTTCCCCGAAACAGTGCATTCAGTCTGAAAACGACAGATACCGCAGAGATGATGCCTGTGGCCTGATGGCATCTGCCACCGGTCCCTTCAGTGCCTGTCATGACTTGGTGAATCCTGAGCCCCATGTGATTAACTGTGTGTTTGACATGTGCATTATGGATGGAGACAGAGCAACACTGTGTCAGAATCTTCAGGGTTATGCCATTATCTGCCAACAAGCTGGGATACAAATCATGCCATGGAGAAATAGTTCATTCTGCC
Seq A exon
GTAAGTTTGAGATAAACTCAAAACCTGTAGAATCAGAACTGCCTTTAAGAGCAGTGGTTCTCAATTTTCGGGCAAATTTTGTATAGCTGCATCCCAAATGGCACACTATGCACCTATGTACTATGTACCTATGCACTTACACACTCAACAACATAGTATGTGTATGTAATATGGTCCCGAATGGATCACTGTTTTTTACTAAGTGGAAATTCAAACCTTCACAGATGATGTTTGATGGTTGGCAAATTGTCAAAATAATTGACCAAACTACCAAATAATACATGCCATGAGTACAACCGCATTCACCATTGGGAGGTGGTATAATCATTCTCATAGGATAATTTGGCTTTTACAATCCAAAATAAATAAATTAATCCAACATACAGCACTTCATTTTAATGGTTGAATAAGTACATCATCCAGGATTATTAAGGTGCACTTATTATTTTTTAGAGTTTCAATGTGAATGCACTATCTACACTATTTATACTACAAAATGGCATAGAATAGTGCTAAAGTGTGTGATTTGGGGCGCACCTTATGTCTTCTTTACTTAACACACCTGTTCAACTTGTTAATAGAGAGATCCATGAACTGATTCTTGTGTCAAATAAGAGGGACATACAAAGCAGCCCGAGGACCATTATTGAGAACCACTGCTTTAAAGGGCCATGAAAACCCTCTCTTTCGGTTTAAGTCTACCTAAGAATTTTAAAAAGAAAATGCTAAAGATAGGTGTGAAGCTCAGCGAGCAGAGGGAGAAGTGGGCATGGTCGGCAGAGAAGGGGAAGGGTAAGAGGAGAGCGAACAACTGTTGTCAGTTGGCTCCCAAAATGAGACACAAACCATGAGGAGACCCATGATTTTATAGTTTACAAAGTTACAATGCAAAGAAATAAAGTAAGCAATTCAATTTCCTGCTACATTTGTTATCCGTAATTACATATACACATAACCACAATTTGTTAAATCATCATTAAGATAATCGGGTTTAAAACAGCAGCACAGATAGGCGATGTGTCTGAATGGTAACAAACTCAACTGATAAAAGACAAAAAGTCCACCATTCTTCAATTCTCATACAGCTAAAAAACAGACAAAAATGCTTGCTGCAAACCAACCACTTTGCTGTATTGGCCCTGACAGAATCGTGTAGAAAAACATGAAACAAATCCCATAGATATTGAAAACAAACACACAACCCGGTCTCACGTATGGCTCACCCGGTCGTTGGGTCTCACAGCTTGGCAGGTCTGCCTTGCCTTCGGAATACATGTGCTCTCATAAATAATTAAGAAGCAGGGTCTTCTCATAGGATAAGAAAACTAAGCTATGAATAATAATGAGAAACCGACGCGACATCAATCCACTAGCAGATTCGCGCTCATCACTGATTTTAATACTGCCCCAAAAATTATTTTAAACCTGGAAGATGAAATTAGCTGACAAAAGCTCAAAATGATCCAGTTTTCCCCACAATTAAAGATGACAGCTGCTAACGTTGTTTTAAATGATGCTAAACACACACACACAAATGTTTTAAAATCTCAAAAAAGGGTGTCTTGAACCTTTAAAGACACAGTTTACCCAAAAATAAGAATTTACTTACCATTTACTGACCCTGAAGTTCTTAAGTGTCTAATGAAAACACACACACACACACACACACACAAAGATATTTTGAAGAATGTTGGTAACCGATAACAATTGACCTCCATAGTAGGAAAAGCAAATACTATGAAGGTCAGTGGTTACCGGTTTTCAACATTTTTCAAACTATTTTCTTTTAGTCAGCTCAAATAGGTCAGTGACAAGTAAAGAGAGAGTGAGTGATGAGAGAATATTTGTTTTAGGGTGAACTATTCCTTTAAGCTGTGTAACAATCAATTTATGTGCATAATATATAACAGTAAAATATAAATTCAGCCATGGGGGAAAAAATCATAAGACCACTTAAAAATTCTCAGTTTCTCTGAATTTGCTGGACATATTGGGAATGTGTTTTACAATAAATTTAATCAATTAGGGTGAAAATTCAGCTCTGCTGTCATATAATACAGTTTATTACCTCCAAACATTACATTATAGTGAATGGGGTATATGCACAGCTAATGTTTTCAGCCAATGATAACAGTTTACAGGTTTAAGTGACTATTTAAAATTTTAACTTATTTTGAGGTTTCTTTTACAGCATCAATGTTATAATTTAATTAAAATACAAATAGACTTAAGCATTTATCTAGTTGTTCAGCGTTAAACAAGATAAAAGACTGTGTTAATGCAGGTGCCATCAGTAGCAGAAGCAGTAGCAGACAAAAAAAATACTGGGGTACAATAAATGTACAAGTTTAAAGACATGGTGCAGAACAATGGCATTTAATGCAGTGCTTGTTGGTCTGATACTTACTTTATATCATTTATATCAGCTTTTACTATATTTTTTAAAAAGCAGCCTTAGTAAGTATAAAGCACTTAATTTCAGAACATTTAAAAAACAAACTTTTTAATGGTCATGTAAAATTTGCAATATTCCATTTTAAAGATTAAAATGGCATGATTAATTTTAGTAAATTCTTATACATTTGTGTTTTCTTTTTAG
Seq C2 exon
CCGCAGACTGTCCAGCTAACAGTCATTATGTGCAGTGCTCTAATAACTGTGCCAAAACCTGCGCCAGTCTTACTGGGTCCATTAACAGCTGCCCAAATATTTGCATGGAAGGCTGTCAGTGTGATGAAGGTTTCCTCTCAGATGGAGATCAGTGTGTGTCTGTTGGAGACTGCGGGTGTGTGCATAACGGCAAATACCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098278:ENSDART00000164162:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(47.4=39.6),PF087426=C8=WD(100=40.6)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.9),PF127142=TILa=PU(16.4=13.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]