GgaINT0138316 @ galGal3
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
NA
Coordinates
chr24:3578162-3579902:-
Coord C1 exon
chr24:3579332-3579902
Coord A exon
chr24:3578755-3579331
Coord C2 exon
chr24:3578162-3578754
Length
577 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
TGTCCCCTTGGCACCTGCAGAGG
3' ss Score
7.88
Exon sequences
Seq C1 exon
GTGGATGACTTGGTGGTGTCCTTACCCATCTCCTTGGAGCTGGGTGCAATCAAAGTCTACCAAAGCGGTTTGTCCACAGCCCTGGAGACTGATTTTGGCCTGCTAGTGACTTACGATGGCCAACACTACGCCTCCGTCTCCGTTCCTGGCACGTACATCAATGGCACGTGTGGTCTGTGCGGGAATTACAACAAAGACCCCGAGGACGATGCGCTGCGCTCGGATGGCAGGTTGGCTTCCTCCGTGCCAGAACTGGGCGAGAGCTGGCGAGTGCCGCACCCCGAGAGGAAGTGCTCCCCTGGCTGTGTGGAGAACTGCAGCGTCTGCGATGCCTCCACCGAATCCCTCTATTTCTCCCCCGAATATTGTGGCTTCCTCAACAAGAGTGGCGGGCCGCTGTGGGAGTGTGGCTCCGTCGTGGACCCCACTGCCTTCGTACATAGCTGTGTCTATGACCTGTGCAGCGCTCGGGAGAACGGCACCGGGCTGTGCCAAGCCATCCAGGCGTACGCTGCGGTGTGCCAAGGCCTGGGCATCCCGGTGGGAGAATGGCGTGCCCAGACGGGATGCG
Seq A exon
GTAAGTGTGGGTATGCTGGTGCTGGGGGCAATTTGCAGAGCCTGCCTGAGGTCCTGGTGATGGAGTAGCAGTGCGGACAGGGGGCCACATAAATGGGAGAAACGAAAGAGACGAGGGAAATGAAAGGGATGATGTTGCCTGAGGCAGAGGGGGTCTGGCAAATGCCACTTGGTCCTTCTTCCCTGCACTGTGAGAGTTTCATGATAGCTAACGGGTGGCAAGAGTCAGGCAGGAGGGGGGAGCTCGGCAATACTGTGTGAGCAATGGGCTGCTGTGCTGATAGCCCGGACCCAAGCTGGGAGTGGCTGGCAGTATGCTGGTCAGCACACCCTCCTTGCTTTTGGTAGCAGATAGCTGCAGGAGGCTCAGTGGTACAGGGGCTGCTTCAGAGAAGCTTTTGCTTGCGTTGAGGGAATGGCCAACGAGGTGTGGGTGAGAAATGGAAGATCCAAGTCTACTGTAAAGTGGGAATGCTAGGTCATTGTACGTTGGTGTGGGTTATTAGGTAGAGGTCCCTAGCTCAGAACCACATGGTAACACGCTCGTCCTGTTGTTTGTGTCCCCTTGGCACCTGCAG
Seq C2 exon
AGGCGGCCGTGCAGTGCCCGGAGCACAGCCACTACTCAGTGTGCGCCAGCGGCTGCCCTGCCACATGCTCAGACCTGACAGCCCCACTGCGCTGCACTGCACCCTGCGCCGAGGGCTGTGAGTGTGACGATGGCCATGTGCTGAGCGCCGACCGCTGCATCCCTGTGCAGAAGTGCGGCTGTGATGTGGACGGACGGTACTACGCCGTCGGAGAGGTGTTCTGGGCAACAGCGGACTGCACAGCAGAGTGCCAGTGCGAGGACGGTGGGGAGGCCAAGTGCTTCAACACCAGCTGCCCCGAAGGAGAGGTCTGCACCATTGAGGATGGCTACCGGGGCTGCTACCCAAAGCGGGAGGGCCTGTGCTCGGTGGGACAGAACCAGGTGCTGCGGACGTTTGATGGTGTCACCTTCCCCTACCCGCTGGAGCACTCTTACACACTGCTCAAAACATGCATGGAGAAGCCTGACTTCATTGAGGTGGACATCAGTCAGAAGAAGCCGGGATACGCTCCCAATGGGCTGCGCGTCATGCGGATCCAGGTGGTTGGCCAAGAGGTGAAGGTTGGAGGAGCCAGCCTGTCAGAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000010677:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.8),PF0009420=VWD=PU(49.4=38.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTATGACCTGTGCAGCG
R:
CTGTTGCCCAGAACACCTCTC
Band lengths:
357-934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]