HsaINT0165599 @ hg19
Intron Retention
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:11720]
Coordinates
chr11:120996011-120999053:+
Coord C1 exon
chr11:120996011-120996581
Coord A exon
chr11:120996582-120998460
Coord C2 exon
chr11:120998461-120999053
Length
1879 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
TCTTCCTTTCCCCGCGTCAGTGT
3' ss Score
5.72
Exon sequences
Seq C1 exon
GTTAATGACCTAGTGACTTCTTTGCCTGTCACCTTAGACTTGGGGACAGTGAAAATCTACCAGAGTGGCATATCTACTGCCGTGGAAACAGATTTTGGGCTCTTAGTGACTTTTGATGGCCAGCACTACGCCTCCATTTCCGTCCCAGGCTCCTATATAAACTCCACCTGTGGACTCTGTGGAAACTATAATAAAAACCCACTGGATGACTTCCTCCGCCCGGATGGCAGGCCGGCCATGTCTGTCCTGGATCTGGGAGAGAGCTGGCGTGTGTACCACGCAGACTGGAAGTGCGACTCCGGCTGCGTCGACAACTGCACCCAGTGCGACGCTGCCACTGAAGCCCTCTACTTTGGCTCTGACTACTGCGGCTTCCTCAACAAGACAGACGGCCCTCTGTGGGAGTGTGGCACTGTCGTGGACCCCACTGCTTTTGTGCACAGCTGCGTGTATGACCTGTGCAGTGTGAGGGACAATGGCACGCTCCTCTGCCAAGCCATCCAGGCCTATGCTCTTGTGTGCCAAGCCCTTGGCATTCCAATTGGAGACTGGCGAACCCAGACTGGGTGTG
Seq A exon
GTAAGCTGGCATCCCATCCCCATGACAGGTCTCTCTTGTGCAGGGGGCAGGGATAGGCTTTGGGGGCTCCTCCAAATGTCCTTGTTAAGACTTGTGACCCAAGAATGAGGGGGAGGTTGAAATTGCACAAATTACAAAGAACGAATTGTGAAAGGATCTTTACTTTTGCCCCCACCTAATACCACAACCAGGAAACAAGAACCCATTGATGAACATACATGGTCTGGAAACATGAAAGGCATGGCAGGAAGTCCCACAGCAGGGGACGGCAGCTCCAGAGTTGAGTGAGGAGGTGGGTTGTCCAGAGGTGGAGGTGGCTACTTTTGTGGCTGTTGAGTTAATGCAGCTGTGGGCCTGGGTCATCAAAACTAGCCCTTGGGAAAATAGGTCACCTTCCACATGGAACCTGTAGCAATTGTTCCTGGCACTTTCTTCTCCACTGTCAGACCCTTAAGGGTTTGTGCCCTGCTGCTGCTGCAGATGAGGAGTACAGCATATGAGTAAAGAAGCCCTTTTTCTTAAATATTAGGAGTGGTTAGGAAAAGCCCCAACTTTGAGGGAAATCCTGGCTCTTTTGAATTACACTTTTGGATTAAGCATTTTGTACCATTTAATTGTCTTAGTACTTTTTCCCTGTATCCCACTTAAAATTTATTTCTTTTTCTAGTTATACACAGTTTAAAAACAAATAGATTTCGTTTCCTTCCTAGTCCTTGGTTTTCTCCATATGAGTAAATAGAAAATTGTAATCCATGCATTTGAGAGTGCTAGGGAGGTGAGAAGATTTAAAAGTTTCTTTAAGTTCCAAGGCTAGAGGGAGAATTCTTCCCATCAGTATAAGTTGGAGTCACATAAACCATAATGTATCAGGTTCAATTCTTAAGAGTTTTGGTCAAACTACAATACAAGCAACTGTATTCTTGCTGTGTGACTGACCAGCCTCTCTTATGACCAGAGCATCCATATTTGGATTCAAGTTGAGATTGAATATGGCTTCTCTTTGATCCTTACAAGAGCATCCAAATTACCTGACTAAAATGTTACAATGGCCACAGATATATATTTTCTAGTGGCACTACTTTCCCATCCTCTACATTTCGCTTTCTTTTCTGGCTCAATGGACTCTGTTTAATTCAGAGAGCTAGTTTGCTAGGCCCCTGAGCCCCTGCTTGTTGGATTCAACCAGACTCAAACATTTATGTAGACCCAGATGTTATTAAAGCAAGAACCGAAGATTTCTAAGGCAAGAAGGGCCTTTAGAAGACATCTTACCTTGTCTCCTGGAGAAACAGCCACACAAATTCTTTGAATTCTTTGGAGGTAGCCAGGGCGCTTTCTTATTTTTAATATCCCAGGGAATTCATCCCCACAGCCTTCCTTGGTCACACTTAGGTATTTTAAGTGCCTCCCTGTTACAAATTTCACGTTTTCAAATTACTCCTCTAATGGTTACATTTTTCATTTCTCCTGAAAATTGGATTTATTTCCTTCTAAGAATGGACCATGCTCTTTAAAATCAGATCAATTTATATGTCCATCAGTGGAAGGTCTTAAAATATCTCGGTAGTGTGGATCATCAAATAATAAACCTATATTGGGTAATCAGTAGTCTAGAAAGGATGGCATCCTGAAAGTTTAATTTTAGTCAAGATGATCAAATTCCAATAGAAGTTCACAGTCCAATCATGCTGCTCAGTAGTTATTAGGAGAGTCATTGAGCTGGGTTTTACAGATACAACCTCAATTCTGTCTTCCCCGAGTGGCCGCTTGACCCTCACTCTAGGAACTAAATGATCCAGGAGGAGCGTTAAGATTCTGGCGGGTTAGCACTCCGGGTCCATTCACCTTGTTATCGGCTCTCTTCCTTTCCCCGCGTCAG
Seq C2 exon
TGTCCACAGTGCAGTGCCCGAGCTTCAGCCACTACTCCGTGTGCACAAGCAGCTGCCCCGACACATGCTCCGACCTGACGGCCTCGCGGAACTGCGCCACGCCGTGCACAGAGGGCTGCGAGTGCAACCAGGGCTTCGTCCTCAGCACCAGCCAGTGCGTCCCTCTGCACAAGTGCGGCTGCGACTTCGACGGCCACTACTACACCATGGGGGAGTTCTTCTGGGCCACGGCCAACTGCACTGTGCAATGCCTGTGCGAGGAGGGCGGGGACGTCTACTGCTTCAACAAGACCTGCGGCAGCGGGGAGGTGTGCGCCGTGGAGGACGGCTACCAGGGCTGCTTCCCCAAGCGGGAGACCGTGTGCCTGCTCAGCCAGAACCAGGTGCTGCACACCTTTGACGGCGCCTCCTACGCCTTCCCCTCCGAGTTCTCCTACACCCTCCTGAAGACCTGCCCTGAGCGCCCAGAGTACTTGGAAATCGACATCAACAAGAAGAAGCCCGATGCAGGACCTGCTTGGCTGCGGGGACTTCGGATCCTGGTGGCCGACCAGGAGGTCAAGATAGGAGGCATCGGGGCTTCGGAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927-TECTA:NM_005422:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.8),PF0009420=VWD=PU(49.4=38.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCTTTTGTGCACAGCTG
R:
TGTAGTAGTGGCCGTCGAAGT
Band lengths:
350-2229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)