BtaINT0146764 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32285694-32288799:+
Coord C1 exon
chr15:32285694-32286264
Coord A exon
chr15:32286265-32288206
Coord C2 exon
chr15:32288207-32288799
Length
1942 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
TCTCCTCTCCCCTACGTCAGTGT
3' ss Score
6.41
Exon sequences
Seq C1 exon
GTTAATGACCTAGTGGCTTCTTTGCCCGTCACCTTAGAATTGGGGGCGGTGAAAATCTACCAGAGTGGCATGTCTACTGCCGTGGAAACGGATTTTGGGCTCTTAGTGACATTTGACGGCCAGCACTACGCCTCCATCTCCATCCCAGGCTCCTACATCAATTCCACGTGCGGACTCTGCGGGAACTACAACAAAAACCCTCTGGATGACTTCCTGCGCCCTGACGGCAGGCCGGCCATGTCAGTCCTGGACCTGGGAGAGAGCTGGCGGGTCTACCACATGGAGTGGAAGTGCGACTCGGGCTGCGTGGACAACTGCACTCAGTGTGACACGGCCACCGAGGCCCTCTACTTTGGTCCCGACTACTGTGGCTTCCTCAACAGGACGGACGGTCCCCTGTGGGAGTGTGGCACTGTTATGGACCCCACGGCCTTCATGCACAGCTGCGTGTATGACTTGTGCAGTGTGAGGGACAATGGGACCCTCCTGTGTCAGGCCATCCAGGCCTATGCCCTTGTGTGCCAAGGCTTGGGCATTCCGATTGGAGACTGGCGCATCCAGACTGGGTGTG
Seq A exon
GTAAGCTGGCATCCCGTCCACACGGAAAGCCACTAGTATGCAGGGGGGCTGGGAGAGGGTTTCCAGGCTCCTCAGAGAGCTCCCTGTTAAGACACATTACCTGAGGGTCAGGGTGAGGTTGAAGTATCACAAATGATAAAGAATGAACTATAAAAGGATCTTGACCTTTCTCCCCAGCCAAAATGGTGATCAGAAAACAAGAAACCACTAATGAGCATCTGTGGTCTGGAGACATGGAATGTGTGGCCAGAGTAGGGCCATTAACAGTGGTGGCCAAGCCAAGGTTGAGGGGGGCGGTCCAAGCTGGAGGTGTCTATCTCTGAGGCCATTGCGGAAATGTGGACGCTGGCCTGGGGAATCAAGACCAGATTTTGGGAAAAGTATTCACCATCCAGATATTTATATAGAACCCATGGCATTTTTGTCCTTGGGTCTTTCTTCTTCACTTGCAGTCCCTCCAGGTTCTATGACTCCTGCTTTGGAGCATTTCAGCTGGTCAGAGAAGGGGCAGTAGACAGGGCAGGTAGAGGCTTTCTAAAATGCTGGGTGGTGAGGAAAAGCCCCAGTAGTGTGGGAAACCCACCTGTCCCCTTGGAATTACACTTTTGGATTGAGTGTTTGGAACCATGTAGCTGTTTTATGGTTTCCTCCTATGCAACTTTCTCTCCATAACTACTCTTCCAAGTAATATAAATGTTAAAAACCAGCAAACAGAAAAGCCAAATCACCTGTTGGAATTTTGTTTCTTTCCTGGTCTTTGGTTTTCTCCACAAGAGTAAACAGAAAATTATACCCCATGCATTTGAGAGCGCAGTGGAAGTGAGATTTTTGAAGTTTCTTTCAGTTCCAAGGCCAGAGGGCAATTTTTTTCCTATCAGTTTAAATTGGCTTCATAGAAATTAATATGCATCAGAATCAATTCTTTCAGAATTAATCAAGCTATTAAAAGACAATATATTTTTGTTTTTTATTTTTTTGCTGTGGGGACTGGCCAGCCTCTATCACGCCTGAAATATCCAAATGCTGATTCAAGCTACGACTGACTGTGACTTCTCTTCAATCCTTGTATAATCTAAGAGCATCCAGTTGCCTAAATTTTTGCCTATCATGGCTAATTTTTTCTAGTGGTACTGCTTTCCTACCCTCCACATTACTCTCTCTCTCTCTCTTTCACTTCAGTGGGATGAATTAGATTTAATTCAGAGAACTAGTCTACCAGGCTCTTGAGCACCCGCCTGTAGGATTCAACCAGACCCAAACCAGACTCAGATGTTTTTAAAATAAGAACTGAATGCTTCCAAGGCAAAAAGGGGCTTTGGAAGGCATCTAGTTCCAATCCAGTCTCCTGGGGGAACGGGCACACAGGTTCTTTTCAGATAGCCAAGGTTCTTTCTTATTTTTCAAATCCCAGAGAATTCATTTTCCGTCTCCTTTGGTCCCTGTTCGAAAATTCACTTTTTCAAATTCCTCCTCTAAGAGTTACCTTTTTCATTTCTCCTGCAAGTTGGATGTATTTCCTTCTAAGAATGGGGTATGCTCTTTAAAATCAGACCAACTTATACGCCCATGAGGTGAATATCTTAAACCATCTCCCTGGTTGTAGATCACTCAATACTAAACCTGTATTGAATAATCGGTGAAATCTAGTTAGGATAGTAACCTGAAGTTTTCTTCCAGTCTTTCTTCCATCTTTCTTCCAAGATGATCAAATGAGGTTCTAACCCTTCTCGCTACTCAGTAGTTATTACCAAAGGATTTGAGCTCCTCACTATAGACACAATCTCAGTCTCCCTTCCCCCAGCCAGTGCCGGCTAGACTCTCCTCCAGGAACCAACGGGTCCGGAAGGGGCGTTCTTCTCCAGGCAACCCCCCTCGCCCCCGACCCTCCGGTTAGCCCCCGGGTCATTCACCTTGTCACACTCTCTCCTCTCCCCTACGTCAG
Seq C2 exon
TGTCCACCGTGCAGTGCCCGAGCTTCAGCCACTACTCCGTGTGCACCAGCAGCTGCCCAGACACGTGCTCGGATCTGACGGCCTCGCAGAACTGCGTCACGCCCTGCACGGAGGGCTGCGAATGCAACGAAGGCTTTGTCCTCAGCACCAGCCAGTGCGTCCCGCTGCACAAGTGCGGCTGTGACTTCGACGGCCACTACTACGCCATGGGCGAGTTCTTCTGGGCCACGGCTAACTGCACGGTACAGTGCCTGTGCGAGGAGGGCGGCGACGTGTACTGCTTCAACAAGACGTGCCGTGGCGGGGAGGTGTGCGCCGTGGAGGACGGCTATCAGGGCTGCTTCCCCAAGCGGGAGACCGTGTGCCTGCTCAGCCAGAGCCAGGTACTGCACACCTTCGACGGCGCCGCCTACGCCTTCCCCGCCGAGTTCTCCTACACGCTCCTCAAGACCTGCCCCGAGCGGCCGGAGTACTTGGAAATCGACATCAACAAGAAGAAGCCCGAGGCGGGGCCCGCCTGGCTGCGGGGTGTCCGGATCCTGGTGGCCGACCAAGAGGTCAAGATAGGAGGCATTGGGGCTTCGGAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456:ENSBTAT00000047085:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.8),PF0009420=VWD=PU(49.4=38.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACTACTGTGGCTTCCTCA
R:
AGGACAAAGCCTTCGTTGCAT
Band lengths:
355-2297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development