MmuINT0158800 @ mm10
Intron Retention
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42374992-42378064:-
Coord C1 exon
chr9:42377494-42378064
Coord A exon
chr9:42375585-42377493
Coord C2 exon
chr9:42374992-42375584
Length
1909 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
TCTTCCTTTCTCCGCACCAGTGT
3' ss Score
6.75
Exon sequences
Seq C1 exon
GTTAATGACCTAGTGACTTCTTTGCCCGTCACCTTAGAGTTGGGGGCGGTGAAAATCTACCAGAGTGGCATGTCTACTGCCGTGGAAACAGATTTTGGGCTCTTAGTGACGTTTGACGGCCAGCACTACGCCTCCATTTCCATCCCAGGCTCTTACATAAACTCTACCTGTGGCCTATGCGGGAACTACAACAAAAATCCACTGGATGACTTCCTCCGCCCCGATGGCAGGCCCGCCATGTCGGTGCTGGACCTAGGAGAGAGCTGGCGTGTCTACCATGCTGACTGGAAGTGTGGCTCTGGCTGTGTAGACAATTGTACTCAGTGTGATGCAGCCACTGAGGCCCTCTACTTTGGTTCTGACTACTGCGGCTTCCTCAACAAGACGGATGGCCCCCTGTGGGAGTGCGGCACTGTTGTGGATGCCACGGCTTTTGTACACAGCTGTGTGTACGACCTGTGCAGTGTGAGGGACAACGGCACGCTCCTCTGCCAAGCCATTCAGGCCTACGCCTTGGTGTGCCAAGCCCTTGGCATCCCAATCGGAGACTGGAGAATCCAAACTGGGTGTG
Seq A exon
GTAAGCTGGCATGCCATCCTATGAATGATGTCTCCCGTGCTGGGGTCAGGGATAGGATTTCAGGCCTCCTCCTCCAGACCTCTTCCTCCAGACCCTGATAAGAATCACGGTCCAAGAGTAAGGGTGGTGTTGCAATGTCCCAAATTATATAGAATGAACTGTGAAGAGAACTTTCCTTGACCCCCACCCAAAGTCCTAACCAGGAAACGATATGCCGTCGATGAACTTAACGCATCTAGATACAGAAAATGTGTGACTAGAGGGAACTCCATTTTGGGGATAGCAGCCCAGACCTGAGCCAGGGAGAGTTGCTGCCACCACTGGAGTGGCTGCTGAAGAAGTGCAGAGACTAGCCTAGGGGACAGAGTCTGCCTCCAGTTATGGCTTTCCCCAGGCAGAGGCTTCTGTCATGGCTCTTAGTTCCTTAGCTTTTATGCCATTTGTCCTGCAGCATCTCATTTAATCTGGTGAGAGAAAGGACTGTGGACAGGAAATGTAGACCATCAATGAGGAAGCCCTTTTCTTATGTAGCCAGGAGTGGTTAGGAGACACCTGACTTTCACTTGTGGGGGTACCCAGGTTGTTTACAGTTGGGGTTTGGACAAAGCTTTTCCACACTGTTTAGTTGCTTGTTCCTTTCCACCCCACTGCCCTATTTAAGTTTCCCCTTTCCCACTTCTATAGAAGCACAGTAATAACTTGTCTCTTTCCTGGTCCTTGGTTCCCTTCCCATGAGTGAGATTATAGACAGCGGTGGTCCATTTTCCCTTCCCGTGAGTAAATAGACAGTTGCTGCCCATGCCTTTGAGAGGCTGCGGAGGTGAGATTTAAAAGTTTCTCTCAATCCCAAGGCCAGAGGGAGCTTCCCCCCGCAAGAGTGAGCTGGATTCACATAAATCACCATGTGTCAGATTAAAATCTCAACAATTTGGTCACAGGAACCAAGAGACGGTGTATCTTCCTTGCAGTTCGACTGACTGACCAGTCACTATTATACCCAGGGCAGCCATCTCCCAATTCACATTCAAGTTGAATATGGCTTCACTTTGAACCTTATATGATCTAAGAGGATCGAAATTGCCCAAGTAAATTTTTATGAATAATGGCTGTATGATTTTTCCCAGGTTCTCATCTTGTTACCTCCCCCAACCCTCTCCCCCTCTCTCTTCCTGGCATGAATTATATTTAATTCACAGCTGGTTTACTAGGCTTCTGCCTGCTGGATTCAACTAGACTCAAACATTTATGTAGACTTGAGCAGTCTTAAATAAGAGAAACAAGCTTCTAAGGCACGGAGGACCTTCGGAAGGCAGACTGCTCCTAGCCAGCCTCCCAGAGGAGCAGGCAAGCAGTCTCTGCAGATCGCTCAGCTTCTTTCTCATTTTTAATGTCCCAGGAATTCATTTCCACAGTTTGCCTCGGTCACACTCAGATATTTTAAGTGCCTTCTTGTTTGAAATTTCATGTCTTCAAATTGCTCCTCTAACGGGTATGATTTTCATTTCTCCGGAAGGTTTTATTTCCTTCTAAGAATGGGCCATCCTTTTTAAAACTCAAGGCATCTCCACTGTCCTTGGTGGAGGATTTGAAACCATCTCTGTGACTGTGGATCACTAAGTAATAACTATTGAGGGATAGGGCTGATGTAGCAAAGACAGACAGTCTCAAGGTGAAACTCAGTGAGTTCAAGCTTAGGTAAGCCCTCACTGGCCCAGCATACAGAGAAAGGAACCCTGTCAATACTTACAGGTGTCCCCTCCATTCTCTTTCCCAGTAAGTGGCCACCTGAGCTTCACTCTGGGGCCTGAATGATATGGGAGGAGCGTTTTTATTTTTCTCCCAGCCTCTGTGCTGGTTGGATTCCAATCTACTCACCTGTGACTGAGCTGTCTTCCTTTCTCCGCACCAG
Seq C2 exon
TGTCTACCGTGCGGTGCCCAAGCTTCAGCCATTACTCTGTATGTACCAGTAGCTGTCCGGACACCTGCTCGGACCTGACGGCCTCTCAGAACTGTGCCACTCCATGCACGGAAGGTTGCGAGTGCAACGAGGGCTTTGTCCTCAGCACCAGCCAGTGTGTCCCTTTGCACAAGTGCGGCTGTGACTTCGATGGCCACTACTATACCATGGGCGAGTTCTTCTGGGCCACCGCCAATTGTACAGTGCAGTGCTTATGCGAAGAGGGAGGGGATGTCTACTGCTTCAACAAGACCTGCCGGAGTGGGGAGGTGTGTGCTGTGGAGGACGGTTACCAGGGCTGCTTCCCCAAGCGGGAGACGGTGTGCCTGCTCAGCCAGAACCAGGTACTACACACATTTGATGGCGCCGCCTACGCATTCCCATCCGAGTTATCATATACCCTACTCAAGACCTGCCCTGAGCGTCCTGAGTACTTGGAAATTGACATCAACAAGAAGAAGCCTGATGCAGGGCCAGCTTGGCTCCGGGGTGTTCGGATCCTCGTGGCTGACCAAGAGGTCAAGATAGGAGGCGTCGGGGCTTTGGAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705:ENSMUST00000042190:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.8),PF0009420=VWD=PU(49.4=38.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCTGCCAAGCCATTCAG
R:
CCTCTTCGCATAAGCACTGCA
Band lengths:
352-2261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types