BtaINT0164251 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010208 | ZER1
Description
zyg-11 related, cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:30960]
Coordinates
chr11:99262324-99263431:-
Coord C1 exon
chr11:99263312-99263431
Coord A exon
chr11:99262440-99263311
Coord C2 exon
chr11:99262324-99262439
Length
872 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
AATGGCTCTTATCTTGCCAGGAG
3' ss Score
7.8
Exon sequences
Seq C1 exon
TGCGATCAGGTGATGGAGTTCTCCTGGAGCGCCCTGTGGAACATCACAGACGAGACGCCCGACAACTGCGAGATGTTCCTCAACTTCAACGGCATGAAGCTGTTCCTGGACTGCCTGAAG
Seq A exon
GTAACGCCTCTCCAGCAGCAGCCGGACCCCACTCGGCCTCTCCTCTGTCCCCAGGTCCCCCAGCTACCCTCTCCCCGTGGTTCCAATGGAAGGGCAGTGGGGGCCCACTCAGACCCACCAGCCCAGGATGTGCTGTGGAGGTCTTCCCTGACCCAGACGGCCTGGCTGGGCCTCTCTTAGAGCCCTCCCTCCAAGGGAATTCCCAGGTGGCGCTGGTGGTAAAGAACCTGCCTGCCAACGTAGGAGACATAAATGAGTTCGATCCCTGGGTTGGGAAGATCCACTAGAGGAGGAAATGGCAACCCATTCCAGTATGGCCTGGAGAATTCCACGGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTTGCAGAGTCGGACACAACTGAAGTGACTTAACAGACAACACACACTCCAAGGAAAAACCCAAACCGCTCTCTCAGTGTGGTCACTCCAACTGCCCAGGTCTGACCGGAGTCCACTGGGGTGTCAGCTGGACAGAATTCTGTCCAGTAGGATGACTTCTTCATCCTAAAACTCATTATTTTCTTGCTCTAGTTTCCAAAAGGATTCCCTGAAGCTTAATATTTTGAGTTTTGATAAATAGAATCATGTTTGTCCCATTCATAATTTTATAGGTCAGCTCTGCACTCAGGCTTTGAGTCTGTGGCATGGAGCCCCACCATGTCAATCCCTTGTAGTATACACGTAGCACTGTCCTAGGTGTACTACGAGGTAGGAGGGCAGCATATTGCACCCTCTCTTTGTCCAGCAGAAATGGCTGGATGGGTGCTCATAAAGCTTCCAGGTCACCAGCATCAGACACAAATCAGGTACTCACTGCTCTGACCCAATGGCTCTTATCTTGCCAG
Seq C2 exon
GAGTTCCCGGAGAAGCAGGAGCTGCATCGGAATATGCTGGGACTCTTGGGGAATGTGGCAGAGGTGAAGGAGCTACGGCCCCAGCTAATGACTTCCCAGTTCATCAGCGTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010208:ENSBTAT00000013468:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=FE(21.3=100)
A:
NA
C2:
PF032249=V-ATPase_H_N=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGATCAGGTGATGGAGTTC
R:
ACGCTGATGAACTGGGAAGTC
Band lengths:
230-1102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development