RnoINT0167578 @ rn6
Intron Retention
Gene
ENSRNOG00000025832 | Zer1
Description
zyg-11 related, cell cycle regulator [Source:RGD Symbol;Acc:1310284]
Coordinates
chr3:8667913-8668630:-
Coord C1 exon
chr3:8668511-8668630
Coord A exon
chr3:8668029-8668510
Coord C2 exon
chr3:8667913-8668028
Length
482 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CTTGCCTGCTCTTGTCCCAGGAG
3' ss Score
8.79
Exon sequences
Seq C1 exon
TGTGACCAGGTCATGGAGTTCTCCTGGAGCGCTCTGTGGAACATCACGGATGAGACTCCAGACAACTGTGAGATGTTCCTTAACTTCAACGGCATGAAGCTCTTTCTCGACTGCCTGAAG
Seq A exon
GTAGGCAGTGCCCGCACGGGCTGCCACACACCTAGCATGCCATCCCGCACAAGCTTCCCATGGCCACACAGGCCAGCCACACACCCCATGTCTGCTGCTGGAAGAAGTGTCAGGAAGCTTTTCTCAGCTTCACCTCCTGAGAGTCCTTCTGCCAGGGAACCCCAACCTGTTCTGCCTGCCCAGAGACCGTCCTCTGCTAACAAGATACAGTTCTGCCCAGAATATAGGACTCGGCTTGTTTCTGTAGCTTCTTAGGGGCTCCCCAGAAAGGACTCCTCTGAGCTGTGGCAAATGGAGCTGTAATCATCCCCAAAGTCAGCTCTCTTCCCGGCCTCTGTCCTGGGAGCACTAGAAAGTCGAGGCCGGCCTACTGTATCTCTCCCTTGTCTAGAAGGGCCCTCCACACAGGCGCCCACAAATCCGCAGGATAACAGTATCACGTGAAGTGATGAGTGTGAAGGCCTTGCCTGCTCTTGTCCCAG
Seq C2 exon
GAGTTCCCAGAGAAGCAGGAGCTACACCGGAACATGCTCGGGCTCTTGGGGAATGTGGCAGAGGTGAAGGGGCTGCGGCCTCAGCTGATGACCTCTCAGTTCATCAGCGTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025832:ENSRNOT00000035002:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCATGGAGTTCTCCTGGA
R:
CTGAAGACGCTGATGAACTGAGA
Band lengths:
230-712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]