BtaINT0164263 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010208 | ZER1
Description
zyg-11 related, cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:30960]
Coordinates
chr11:99263591-99264767:-
Coord C1 exon
chr11:99264552-99264767
Coord A exon
chr11:99263633-99264551
Coord C2 exon
chr11:99263591-99263632
Length
919 bp
Sequences
Splice sites
5' ss Seq
GTGGTGCGT
5' ss Score
6.46
3' ss Seq
GTTCTGTTCTCTGCCCACAGACC
3' ss Score
11.94
Exon sequences
Seq C1 exon
GTCCAGCGGAACTGCTGCCTGACGCTCTGCAACTTCAGCATCCCGGAGGAGCTGGAGTTCCAGTACCGTCGCGTCAACGAGCTCCTGCTCAGCATCCTCAACCCCACGCGGCAGGACGAGTCGATCCAGCGCATCGCCGTGCACCTGTGCAACGCCCTGGTCTGCCAGGTGGACAACGACCACAAGGAGGCCGTGGGCAAGATGGGCTTTGTTGTG
Seq A exon
GTGCGTGTAGCGGGGGAACTACCCTTCCCTCCTCCCCTCCCTCTCTCTTCCAGAGCCCCGCTGCTGAAAGGGTGGATTTGGGATTCACATCCTAGCAGTGAACATTGCTTCTGACCCTAGATTTCCTCCACCTAGAACTCTCTGTCATTCTCTCCCAGCCTCTCCACTGTCCCGGGAGGTCCCACTGTACTCCTGCCTGCTCAGACCAGGTGCCCCTGTTAAGTCTTCCCAGATGAGATTAAAGAAGTATCTGAGGGACTAGCTGTTTAACATCAGCCTCCTCCCTGGGTGTGAGCTCCATGGGGAAAGACACCATGCAACATCCTTCCATCATCCTGACCCAGCACTTCCTAGCACAGGGCCCAGCACGCAATGGGGGAGATAATCAATATTTGCTGGAGAAGGGAAGGGAAGAATGAGGGAGGCACCTCCAGTCTCCTTTCAATCATCACTGGGGAAGCTGAAGTCCACAGGGTGGGAGGTGCCCGAAGCGGGGCGGGTCAAGATGGAGCCAGGCCTCCTAATGCTAAGCACCAGGTCTGTGGGTTGCACTTCTTCGAACAGCCTCCCAAATAGAGAGGCAGGTTTTTTGTTTTTTTTTAATATTTATGTATTTGGCTGTGTTGGTTCCTAGCTGCGGCAGGCTCAGTAGTTGTGGTGCTCGGGCTTAGTTGCCCTGCAGCATATGGGATCTTAGTTCCTCAACCAGGGATCGAACCCACGTCTCCTGCTTTGGAAGGCGGATTCCCAACCACTGGGCCACCAGGGTAGTGCCTAGAGAGGCAGATGTGGTCTCGTCAGGAGGTACTAACAGGAATGGAGTAACTGACTCTTTCCTCCATCTTGGCTCTGGGAGGACACAGTAGCTCTTGAAGCCCTGGTCCCCCCGCCCCCCTCAAGTTCTGTTCTCTGCCCACAG
Seq C2 exon
ACCATGCTGAAGCTGATTCAGAAGAAGCTGCTGGACAAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010208:ENSBTAT00000013468:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=PU(32.2=81.9)
A:
NA
C2:
PF032249=V-ATPase_H_N=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGCTGCCTGACGCTC
R:
TTGTCCAGCAGCTTCTTCTGA
Band lengths:
246-1165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development