HsaINT0185349 @ hg19
Intron Retention
Gene
ENSG00000160445 | ZER1
Description
zer-1 homolog (C. elegans) [Source:HGNC Symbol;Acc:30960]
Coordinates
chr9:131504079-131505024:-
Coord C1 exon
chr9:131504809-131505024
Coord A exon
chr9:131504121-131504808
Coord C2 exon
chr9:131504079-131504120
Length
688 bp
Sequences
Splice sites
5' ss Seq
GTGGTACGT
5' ss Score
8.61
3' ss Seq
ACTCTTGTCCCTGCCTGCAGACC
3' ss Score
10.88
Exon sequences
Seq C1 exon
GTGCAGCGGAACTGCTGCCTGACGCTCTGCAACTTCAGCATCCCCGAGGAGCTGGAATTCCAGTACCGCCGGGTCAACGAGCTCCTGCTCAGCATCCTCAACCCCACGCGGCAGGACGAGTCTATCCAGCGGATCGCCGTGCACCTGTGCAATGCCCTGGTCTGCCAGGTAGACAACGACCACAAGGAGGCCGTGGGCAAGATGGGCTTTGTCGTG
Seq A exon
GTACGTGTGGGGGGCGCTGCCCCCTTCCTCCTGAGCCTCACTGCTCTCCCCCACCCCTCTACCCTGAGCGAGAGTCTCAGAGCAGGGCCTGGGGCTGGGAGTCGGAGAGGGAGAGTGTGCTGAAGCATGAGGGATTTAGGCTAGACCAAAGGAAGAATTTCTTAATGCTGAATGTTGCTGATGCCCTCATAGATTTCTTCCACCTAGAGCATGCTGTCATCCTGTCCCAGTCCCTGCGCTCATCCTGCTTTCATAAGCTCTGTAGGGAAAGATGCCATGCTGTCCTTCCGTCATTGTGTCCCCAGCACTTCTTGGCATGGGCCCTGGAGGCCAGTGGGGAGATGATAAATATCACTGGTGAAAGGAAGGAAAGAATGACAAAGGAGCTCAAGAGCTTCTGGTCTCATTTGATGGCAGCGAAGCTCAAGCCCCAGCGGGAAGGGCTGTGCCCAAAGTCACAGGGGAGTCACCCGAGGGCCAGGAACGGCACCCGGGCCTGCTAATGCCAATACCAAGGGGCTGAGGCGTGGATGCCTTCAAATAGCCTCCCCCAAATATAGGGAGACTTGATCTCGTCAAGACTCCTGAACTAGCCATGGCGTTGCTGAGCCTCCCCTCCATCTTGGGTTCGTGGGGGTGGGAGTTCTTCAGCCCCAGCACTCTAGCAGACTCTTGTCCCTGCCTGCAG
Seq C2 exon
ACCATGCTGAAGCTGATTCAGAAGAAGCTGCTGGACAAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160445-ZER1:NM_006336:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=FE(32.7=100)
A:
NA
C2:
PF032249=V-ATPase_H_N=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGCTGCCTGACGCTC
R:
TGTCTTGTCCAGCAGCTTCTT
Band lengths:
250-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)