BtaINT0164313 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017731 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr14:8234952-8236880:+
Coord C1 exon
chr14:8234952-8235101
Coord A exon
chr14:8235102-8236706
Coord C2 exon
chr14:8236707-8236880
Length
1605 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
TGTTTTTCCTCCTCTGACAGGTG
3' ss Score
11.84
Exon sequences
Seq C1 exon
AGGTTTCCATGAGCACCATCTCCGAGGTTCTCGGGAGGAGGGTCCAGCTGAAAGGGCTCATTGGCAAGAGAGCCATGAAGTGCCCATACTGTGATTTCTATTTCATGAAGAATGGCTCAGACCTTCAGCGTCACATCTGGGCTCATGAAG
Seq A exon
GTGCGTGTCCCTCCATCAGAACAGAGCTCGTGTGTGGTTTTAGAGCTGCCTGTGGGAGTTCTTGGGGCTTCCCTGGTGGCTCAGTTGGTAAAGAATCCGCCTGCAGTGTGGGAGACCCGGGTTTGATCCTTGGGTTGGGAAGATTCCCCTGGAGAAGGAAATGGTAATCCACTCCAATATTCTTGCCTGGGAAATCTCATGGACAGAGGAGCATGGTGGGCTACAGTCCCATGGGGTCACAAAGAGTTGGACACCGTTAAGTAGTGACTAACACTTTCACTTGGGGTTCTTTAGGAGGAAGCCATGTTCACACCCCCTGCAGCTAGAGTTCTGTTTACCTACTGCAAAAATGTGTCTGTCAGCCAGCTGAGACCAGTGATTTCAGCTGTGCATGGCTCAGTTGCAGTGAGCAGAGATGTGCAGTCTTCATGGCCTGCTGGGAGCTATAGTTGAGCAAGTCACCACAATTTCTGTGCGGAAAGTGAGCTTCAGGAGAGCAGGGACCAATGCGCCAGCCTGGTCGTGGCGGTGACCCTGGTGGTCTCCCTGATGCCCTGTGTGTGGGGGCGTTGAGGAGGTGCTGGGGTGCTGGACGAAGGAATGCCCTGAGGACATCAGACTCTCTGATTCCCACGGGCAGGGGAGAGCTGGGTGGGGACCGAGCAAGGGAGAAGGGAGGCAGCCCCTGCCTCAGGGTGCTCGCCTGTGCAGAGAGGCGTGGGCCGCGCACGGGCACTCGGGGCAGCTGATGGTCGGGGTGCCATCAGAGACAGTGGGGCTGTGCTTCTCCCCCTGGGAGGGCACGTGGCCTTCCCAGCAAAGAGGCTTGGAGCCCTGAGGCTGGGGGCTGGCCGTCCTGTGAGTTGGGAACCCACAGTGCTGCAGTCAGGAAAGCAGGACAGCTCCCCAGGGGGACGGATGAAGTATTTTCTACAATCTGTGATCAAATGAATGGTTCAGTAAAGAGGGCAGGACACGGCAGAAGGAGCTGAGACCAAAGCCAAGGTTGGGAGATACTTTTTCGTGGGCCCTGGCCAATAGTTGGGGAATGGAGGAGGACTAGCCCAATGGTAAGGATGCCTCGGCAGTGGAGCCGTCAGCCCTGCAGCAGCGACGAGCGTCGTAAAGCTCCGCTTGCCTTATGAGCTGAAACACACTCTCACGTGTGGGCCTGCACGCCCGGGCCTGGTGACTTTTGCCAAGGCCCTCGGTTAACGCTTGTCAGTGTAACTCAGTTCAGTGGAATGAACGGCCGCTGCTGCCCGTGCTTAGCGTCTGTGCCCTTGGAGATCACAGACCGTGGGGAGGGGCTGTAAGGCACTCACTGTCATGTGTGGTGGACGGTACAGCAGTCATGACAGGGGATTCGGGGGCACCGATTAGGAGGCGAGGAGGAGTTCTGCTGCAGGCAGAGGTGGAAGGGCATTGTGGTTGGAAGGAATAGCGTGGGTCGGAGAGAGGCCTGGGGGAGCGTTCGCCGTGTGCACTGCTTTATTCACAGTGGACAAGGGGAGGTGTGTGTGTAGACATGTATGTGTATGCATTCCTTCAGATACACACACACACGTATACATCTGTTTATCTCTGTTTTTCCTCCTCTGACAG
Seq C2 exon
GTGTGAAGCCCTTCAAGTGTTCCTTGTGTGAGTACGCAACTCGTAGCAAGAGCAACCTCAAGGCTCACATGAATCGTCACAGCACTGAGAAGACCCACCTGTGTGACATGTGTGGCAAGAAGTTCAAGTCCAAAGGGACGCTGAAAAGCCACAAGCTCCTTCACACCGCCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017731:ENSBTAT00000023578:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=PD(37.8=33.3),PF134651=zf-H2C2_2=PU(38.5=19.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=25.4),PF134651=zf-H2C2_2=WD(100=44.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTTCCATGAGCACCATCT
R:
CGGTGTGAAGGAGCTTGTGG
Band lengths:
318-1923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development