RnoINT0167649 @ rn6
Intron Retention
Gene
ENSRNOG00000025140 | Zfat
Description
zinc finger and AT hook domain containing [Source:RGD Symbol;Acc:1310886]
Coordinates
chr7:109118960-109121964:-
Coord C1 exon
chr7:109121815-109121964
Coord A exon
chr7:109119134-109121814
Coord C2 exon
chr7:109118960-109119133
Length
2681 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TATGCATTTCTCCTTGGTAGGTG
3' ss Score
8.57
Exon sequences
Seq C1 exon
AGGTCTCCATGAATACCATTTCTGAGGTTCTTGGGAGAAGAGTCCAGCTCAAAGGGCTAATTGGAAAGCGAGCCATGAAGTGTCCGTATTGCGATTTCTATTTCATGAAGAATGGCTCAGACCTTCAGCGGCACATCTGGGCTCACGAGG
Seq A exon
GTAAGTTGTCATTCCATCTGGAACACCTATTTAATTTCACGCTGTGTGCATTATTTTGGGACTACACAAGGAGGACACTTACCTTTACATGCCCTGATGTTAGGATGTCTTTAGCACATAGATAGATGACTACCAGCCAATGGAGATCAGAGATTAAGACCATGACTTTAACTGCAGTTGTGGTTAGTAGAGGTATTCCCCACCTTCAAGCTCTGGTTATAACTATAGTGAAATAGATCACTATACTTTGCTTACTGGTTAACTAGTGTCCGGAGATCAGGAAAGCCCATATGTTCTCTGGACACTTGCACTGCCCATTACTATGCTCTGTATATAGTTGGCATTGAAGTACAATGAAACTATGCATGATTGGCAGTAAAGAAGACAGCAGGAGGCTTGGCATTTTGGCAGTGAGGAGTGTCACTGTTTATGTTGTAGAGAGAGGATTGGACAGTGGAAGGGTTGAGTAGAAATGTGGCAGTCCAGAGAAACATAGGGCCAGCTGTGCTCAGGGGGCTTGACCAGGAATGAAAGTGTTGGACAGTCGCTTGCCAGGATTCTGGCAAGTTGGAGGTCAAGAGTCTTCTGTCATCTACCTCATTCTTTGCTGCTAGAGGAGAATGTTGCCCTCGTGGGCATGAGGAAGGTGCAAGCAGCAAAATGCCCTGCTAACCTGTGTGTTAGTTCCTTCCTGCTTGTCAGGAGCTTGACCACTATAGGCAGGACCACAAGGTCAGAGGAAGAGGCATGACCAAGGATGTTGTATAATATACAGTCAGGCAGGGTCCAGGGAGGAGCAGGTGGGAAGGGAAACACCTCTGTCAGTGAAGGGAGAAGGCAGTGGAACTGAGGTGCGATGCTGAGCCGTCAAGGTGCTCTTTTGTTTGCCAGCACTTACTAAGCACTGTGGGCCCCGGCAGTGTATTTTCAGCTTGCTCATGGTACCCTAGTTAGTGTATTCAGGGACTTGAAAGCCATGCTAGTTTTACCAGTGAGGAACAAGAGGCACAGAAAGTTAAAACAAATGCTTATGTTGCACAGGCAATAAATAGTAGGAACTGGGATTTGAACCCATGATGCATGATTCTGCAGCCCTGTTCTTTACATCTTTGCTCGCTCGCATTAAGAGAAAGTAATACCTCCTATGTGGAGGCAAGAATGGAGGAGTTGACAGTGGTGGTGAGATGAACACCCATGTTACTTTCTGAGGGCATTGAAGGGATTCATTGGTAGGTAGGAATTTTCTCAGTAGAGAAGGAGGCAGAAGCCTTTGTATGGAGATTGGTTTAGAATGGTGCTCATGGGAATCATCTGGGAGTGGTCAGAGACAGAACCAAGGACCTGACACTGAAGGGCATCCAGGGAGATGGGAGCCCAGGATCATAAATCCATTCCCTTGGGTGATAACGCTTGCATGGCAGACAAAGGTCTGGAGTGGGAGAGCATGCTGCAGTCTTCCCTCATAGGTGTATATGATGCAGGATGGGACAAACATTCTATCTTCCGGTCACTTACCCATGAAACACTACTATAAACTGCCTTGGGATTTGCTGTAGGTATCAATCAGATGGTCTCCTACATTCTTTAGAAGAAGACTCAATGTGTGTCCAGGCTTAATGGATAGCCAACAGTATGCTTCCACAGGAGACAGGGGTGTTGATATTCCACATCGAGCTTTTGGAAGAAATCTCTTATTTTGAAAACCTTCTGAATTATGGTAAAGGTTAAGGAAATGAAAGGCTGCTGTTTTATGTTAGAGTGTCATGGCCTGCTCTTTTTCATTTGTTTATGAATCTCTCTATAATGATGGAATTATAAAGGAAAAAGAAAAGCCTACTTACCCACATTACAGTGTTCAGGGATCTTTGGAGCTAATCACTGCACTGCACTGTAAGTATTCTTTCTCTCGGCTCCCTCCCAAAATAAAACACGGGACAAGAGCAACAGTAGGCAAATGCAAGAGCTAAGCATGAAGACTAACAAGAAGGGGCAACATAAAGACAAGTCCTGGGGACTGTCGATAGTCATAGATGTGACTTCATTCACACGGCAGGTGCTCATAGAATCTAAAAGTTCAAAGTGGTCAAGAAATGCATTTGAGATGAACCACGATGGCTAGTGGGTGAAAGCAAGACGAGCAGAGTAGGCACAGTAGCTTGGGAATGGTTCAGTGCGAGTCATTGGCCTGCAGAACATCCAGTGTAGTGTGACTCTGTTTATGTTATAAATGGGAATATTCTTCCAGACTTGACCCTGAGTGTCTGACCCCATTGATTTCTGCAAAGAATTTAATTTTTATTTAGTTTAACTCAGTTCAGTTGGATTTAATAACTGCTTTGTAAGTTGAGCAGGGTGTCTGTCTTTGGGGAGTTACCAGACTATAGGGAGAGCAGAGGTGACCAACTTGTTGTGATATGCAAGAGTATATTGTAGAATGTTGATAGGCAACTAGAAAGGTCAGGAAGTACAGACTTGGGGACCTTGACGTCTTCTGCAGTATTTCTGTAAGGTAGAACAAGATGAGACAGGCTAGATATGGGAAGTGTGGGCATGTTGGGAGTAAGCAAGTATATTGCTTTGTTCAGATGGATGCTTTACATGGTGTGAACTGTTCATCTGGATCTCCACCCATGTGTACACAGACATGTGTAAATTTACAGCTATGCATTTCTCCTTGGTAG
Seq C2 exon
GTGTGAAGCCCTTCAAATGTTCTTTGTGTGAGTATGCAACTCGTAGCAAGAGCAACCTCAAAGCTCATATGAATCGTCACAGCACTGAGAAGACTCACCTCTGTGACATGTGTGGCAAGAAATTCAAATCCAAAGGGACATTAAAGAGTCATAAGCTCCTTCACACATCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025140:ENSRNOT00000068291:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=19.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=25.4),PF134651=zf-H2C2_2=WD(100=44.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]