BtaINT0164395 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039287 | ZFP69
Description
Bos taurus zinc finger protein 642 (ZFP69), mRNA. [Source:RefSeq mRNA;Acc:NM_001102063]
Coordinates
chr3:106265532-106272963:-
Coord C1 exon
chr3:106272878-106272963
Coord A exon
chr3:106265659-106272877
Coord C2 exon
chr3:106265532-106265658
Length
7219 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GAATATATTGGATATTCTAGGAA
3' ss Score
4.86
Exon sequences
Seq C1 exon
CTCTGCTATCTCAGGATGCTGATGAGACCCAGGGAGAAAGTTTAAAGGATGAATTGACCCCCGGGACCCCAACAACAGACTCCCAG
Seq A exon
GTGGGTTGGAGTTTCCTGTCACTTTCTTGACATGCTTTTTAGTTTTTAAGATTATAATTTGCCCTTTTCTGGGGAGTTGGGTATATTGAGGCTAATGAATTTAACCAGGGAACTCAACGCAAGTTTGTCTTGTACAGAAAACTGGTCCACAGTGGTGGCAGTTTCCCTCCTCTTAGAAAACGTTCTTCGGACTTCCGTGGCGGTCCAGTGGTTACAAGTATGCACGTCCACTGCAGGGGGTGCAGGTTTGATCCCTGGTTGGGGCGTTAAGATTCCACATGCTGTGTGGCCAAAAAATATTTTTTTTTTAAATATTTCTTTCCAGCCAACATCTAATACAAATTTTTGTAGAGAAAGCAAAATGAATGATTTAATTCTAACCCATAAAAACCAATAGGTACCATTTGGGATCTAAGATAAACCTCAGTTTTCATGAGTATTTTATACTCAAAAATGGGTGACATCTATCACTCCATGAAGTGGCCCATAGAATAGTGGCATGAGCAGAGGTCAAATAACAGCTAAAGACCTGAGCAGAGAAGAAATGGTCAGGCGATGGAGCACACACATTAGACAGGCTGGGCAGTTACAACATGGAAACATGTCCTCACCACCTGGTAGCCGCACAGGTGAAACAGAGAAGGAAAACTGTAGAGTAAAGTGAAAGGAAGACTTATTAAAGCGGGGACATTATCCGAGGACAGAAGAGTTTTGACTGAGAACTTGGGTTTTGAAATTGGATGGTACAGAATTTGAACTTATCTCTGGTATTTACTTACTCCGTGATTTTTTTTTTTTTTTTTTTAGGTTTTTTTATGATGCCATTTTCTTTAGCTAATTCAGGTGCTAACATCTTTTAGGATTGAAATGCATTCCAGGGCTATTTCCAGTAATATGGAAGAAATAGTAATATTCTAATTATTTGGAGAGTTACCTTATCTCTGCATTCCACTTTTCTTTAATTCTCACCTCTTGACAGTTAAAAATACTGGTGGCATTCTTAGCACTGGGAAAAGATTAAATTTCTTAAAATTGAGATATAATTTATATATAGGAAAAACACTTAAGAAAGTACATGGTTCTATTTTGACACTTATACACCATGTAACCAAGTTGAGCATTTCTGCCTCTCAGAATGTTCACTTGTGCCCCTTTCCAATCAAAACTCTGGCCCCCAGTAGAGAGACAGTACATGGGATTTCTGCATTATTTCTTACAACTGCATATAAATCTATGATTCAAATTATCTTATAAATCTACAATCTCAAAATAAAAACTTGGAGAAAGAATCTGTATGTGGCAGTGGTTAGGTATAATGCTCTACAAATGTCAGGTTAAGTTGATTGATAGGTGTTCAGATCTACATCCTTGATAAATTTTTGTCTACTTGTTCGATCACTTAGTGAGAGGAGTGTTAAAATCTCTAATTATTGTGATTTTGTTCATATCTTCCTTTAGTTCTGTCAAGTCAAATTCTATTGTCAGGCACATATACACATAGGATTATTGTCTTCTTAATGAGCTGACCATTTATCTTTAGGAAATGTCTCATCATATTCTTTTTCCTAAGCCCACTTTGTCTGATTTAATGTAACTTCTCCAGTGTTTTTAGTTATTGTTGGTATGGTATAGCTTTTTTCATTCTTTTAACTTATTTGTGCCTTTATATTTAAAGTGTGGCCCTTCTTAGATACAGCTGGGACTTGCATGCTTAGTCTGTTAACAGTTACATAATCATTGATATGGAGCTTCCCAGGTGGCTCAGTGGGTAAGGAAGCCACCTACAGGATTTCCCTGGTGGCCCAGTAGGTAAGACTCCGTGCTTCCAATGCAGGAGGCCTGGGTTTGATCCCTGGTCAGGGAACTGGATCCCACATGCCACAACTAAAGATCCTGCATGCTGCAACAAAGACCCGGTGCAGCCCAAAAAAACCCAAAACAATCCGCCTGCAATGCAGGACACGCAGGAGACATGGGTTCAGTGTCCTGGGTAGGGAAGATCGCTTGGAGGAGGGCATGGCAACTCACTCCAGTATTCTTGCCTGAAGAATCCCAAGGACAAGAGGAGCCTGGCGGGCTATAGTCCATAGAGCCACAAAGAGTAGGACACAACAGAAGTGACTGAGCACACAGGCAATCACTGATACGCTTGTAATTTAAGTGTATATTCTTGTCCTTTGTTTGTTGTTTGTCAAACCTATTCCTTCATTTCTTTGTTCTTCCTCTCCTGCCTTCTTTTGGATTGTGCAGTTTTTTAGTATTCTATTTTATGTCTTCTAATGACTTTTTTAGCTATACTTTGATTTGTTTTTAGTGGTTGTCCTGGCCATTACAATATGCATTTTAAACATGTCACAGTTGAATTACTATTATACTGTTTCACAAAGAATATGAAAATCATATTTTCCTGTTTACTCTTCCCATTCTTTGTGTGTTGTCATCATGCTTTTCACTTTACATGTTATATAGCCTATAATACATGTCCTTATTTTTCCTTTAACAGTAAACTGTCTCATAAGAGATTAAGAAAAGGAAAAAAAATGAGCCTTTCATATTTGCCCACATATTTACCAGTGCAGGCTTTCCTGGTGGCTCAGACAGTAAAGGATCCGCCTATAATGCAGGAGACCTGGGTTTGATCCCTGGGTTAGGAAGATCCCCTGGAGAAGGAAATGTCAACCCACTCCAGTACTCTTACCTGGAGAATTCCAAGGACAGAGGAGCCTGTTGGGCTCCAGTCCATAGGGATCACAAAGAGTCGGACACGACTAAGTGACTTTCTTTCACTTTACCAGTTGGAGCACTTTTCAGTCCTTCCTTTAGGTTCTAAGTTTCTGACATCATTTCCCTTCAGCCTAAAGAACATCATTTAGCATTTCCTGTAGTGCGGTTCTTCAGATGACGAATTCTCACAGCTTTGGCGATCTAGAAATGTCTTTATATGGTCTTCCTATTAGAGGATCTTTTACTGAATATAGAATTCTAGGATGACAATTTTTTTCTTTTAAGCACTTTAAGGATGTTCCATTGTCTTTTGGTTTATATTGCTTCAGATAAAAAGTGAGCTATTTTTCTTATTCTTTCCTCAGATGTGACATGTCTTTTTGTTTATTTTATACTAACTTTTCTGGTTTTCCTGTTCTTCCTTTCCTACTTTCTTTTCACTACTTTTATAATCTTCCCTTTTATCTTTGCTCTTCAGCAGTTTTAATGATGTGCATAGACATGGTGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTCCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCTGAAGTCCTTGGTGTCGCTAAGAGTCGGGGACGACTGAGAGACTTCATTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTAGTGGGCTGCTGTCTATGGGGTTGCACAGAGTTGGACACGACTGAAGTGACTTAGCAGCATAGACATGGTATTCTTTGAATTTTTTTTTTTTTTTTTTTTTGGTGGAGGATTTGCTGCCTTTTGTATTTATAGGTTGATTTTTTTTTAATCAACTTGGAAATTTTTCAGCCTTTATTTCTTCAAATATTCTTTTCTTCTCATTCTTCTCCTTCTGAGATTTTAATTACATGTATATTAGACCATGTGATATTATCCCCCCCTCTTTTTTTTTCTTTTTCTCTCTTGGTGCTTCCATTTGAATACTGTCTATTGACCTGTGTTAAGTTTCATTGATCTTGTCTTCATCAGGGTCTATTTGATGTTAAGCCCATCCAGTGGATTTTTCAGATATTGTATTTTTCAGTTGTAGAATTGTTTTTTAGTTCTTTTTTGGTATTTCTATCTCTCCTCAATTACCCTGACATTTTGACCTATTCCATCCATATTTTATTGTAAACTCTTCAACATATATTTTAATAATTGCTTTAAATTTCTTGTCTGCTTCTTACAGTGACTTGGTGACCTAGGTCTTTGTTTCTTATGTTTTTATTTCTTGATTATAGGTCAGATTTTCCTCCTTCACTTGCCTAATAATTTTTTATTATGGTTCAGATATTCTGTATAAAAGAACAGTGGAGGATGAAATATGCATAGATAGATCCATTTCCCCATCAGCCTGGAAGGACATTGGTATTGAGAATAACTACAATGGCTTCCAGTTTTTTAATGAAACCTCAGATGTGTGGCCTCCTGGCCAAGCATCTGCAATTTCATATTGTTAGAGCAATCATTGTATCGCTGGGAGTTGCAACTTTCTACAAGTTTGCTTTAGTGAACCAAGAAAGACAGAATAAAGGACAGAAATGGCAAGGACCTAACATAAGCAGAAAAGATTAAGAAGAGGTGGCAAGAATACACAGAAAAACTGTACAAAAAAGATTTAATGACCCAGATAATCGTTTTGGTGTGGTCACTCACCTGGAGCCAGACATCTTGGAGTGTGCAGTCAAGGCAGCCTTAGGAAGCATTACTACAAGCAAAGCTAGTGGAGGTGATAGAATTCCAGTTGAACTGTTTCAAATCCTAAAAGATGATGCTGTGAAAGTGCTGCACTCAATATGCCAACAAATTTGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTCAAGTTTTCATTCCAGTCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAATTACTTTACAGTTGTGCTCATTTCACATGCTAGCAAGGTAATACTCAAAATACTTTAAGCTAGGCTTCAACAATATGTGAACTAAGAACTTCCAGATGTTCAAGCCGGATTTAGAAAAGGCAGAGGAACCCCGAGATCAAATTGCCAACATCTGTTGGACCATAGAAAAAACAAGGGAATTTAAAAAAAATCCACTTCTGCTTCATTGACTATGCTAAAGCCTTTGACTGTGTGGATTACAACAAACTGTGGAAAATTCTTAATGAGATGGGAATACCAGACCACTTTACTTGTCTCCTGAAAAACCTGTATTTAGGTCAAGAAGCAACAGTTAGAACTGGACATAGAACAATGGACTGGTTCAAAATTGGGAAAGGAGTATGTCAAGGCTATATATTGTCACCCTGCTTATTTAACTTCTATCCAGAGTACATCATGTGAGATGCTGGGCTGGATGAATCACAAGCTGAAATCAAGATTGCCAGGAGAAATATCAACAACCTCAGATATGCAGATGATACCAGCATAATGGCAGAAAGTGAAGAGGAACTAAAGAGCCTCTTGATGAAGGTGAAAGAGGAGAGTGAAAAAGCTGGCTTAAAACTCAATATTCAAAAAACTAAGATCAGGGCATCTAGTTCCATCACTTCATGGCAAATAGATGGGGGAAAAATGGAAACAGTGGCAGGTTTTATTTTCTCCTGCTCCAAAGCAGGAGCTCCAAAGCAGGGCTCCAAAATCACTGTGAATGGTGACTGCAGCCATGAAATTAAAAGATGCTTGCTCCTTGGAAGAAAAACTGTGACAAAGCTAGACAGCATATTAAAAAGCAGAGATATCACTTTGCTGACAAAGGTCCATTTAGTCAAAGCTGTGGTTTTTCCAGTTGTTGTGTGTAGATGTGAGAGTTGGACCATAAAGAAGGCTGAGCCCGGAAGATGCTTTCAGACTGTGGTGCTGGAGAAGACTCTTGAGAGTCCCTTGGACAGCAAGGAGATCAAACCAGTCAATCCTAAAGGAAAACAACCCTGAATATTCATTAGAGGGACTGATGCTGAAGCTGAAGCTCCAATACTTTAGCCGTCTGAGGAGAAGAGCCGATTTATAGAAAAGACCCTGATGCTGGAAAAGATTGAGAGCAGGAGGAGAAGGGGGGCGACAGAGAATGAAATGGTTGGATGGCATCACTGACTCAATGGACATGAGTTTGAGCAAACTCCAGGACAGAGTGAAGGACAGGGGAGCCTGGTGTGCTGCAGTCCATGGGGCAGCAGAGTCGGACGTGACTTAGCGACTTAACAACAAACAACAAGAATGCAGGCATATGCAGATTCTGCAGAAAGTATCGTTCTGTGAAAAATTTTAAGGTGATGAGAAAGGCTGGTATCTTTCAGAGTGCAAAATGATTTCAGAATGTAAAAAATTTCTTTGGGTTGAGTTGCATGAAATTCATCCCTGACCTGTGTTTGTTAATTGTGAAGCATGAATATCTGGGCTATGGAATAGTTTCTCTTGATAAATAAACAATAAATAAATGTATATATGTATAGATAGATAGATATAGTCTGTTTGTTTTGTCTGTTCTGTTTATTTGCAGAAAACTCTAAGCCTTTTCCTCTTGACTGGTGGTTAAGGTGAGGGACTGATTATTCATATTTTTCCTAGAGCTGTGGCTGAGCTCTGGCTGAGATGCACTTTAGTTTGATTGAATTCACTTTTTGTCTTTTTTTGGTTGCATGGCATGTGGGATCTTAGCTCCCCAACCAGGGTCTGAACCCATACCCCCTGCACTGGAAGGTATGGACCTTCCACCGCCAGGGTCCTTGATTGAGTTCACTTCTGATTAACCCAGCTACTAGCACCCCATGCCATCAGTGCTGAAGGGCTGATCCTTTTTTATCTGTTCAGTATTTGAGCTAAGGAAGAGCTCGATCACAGTTCCAAACCGTTTTGTTCATCTTGCATTAAACTCCAGCAGGGCCCCAGAATTTCAGCCCTGGAGGAATGCATTGGTCTTTGTGACAGTAAGTACTGAAAGCCTCTCTCTCCGTCCCCTGGACCCTCTGGTCTCATCTACTTCCACTTGCCCGCCTCCAGCAATGCTGGCCACTCTCCTGCTCCTCAGACAAGCCAAGGACATGCACTCCTCAGGTCCTTTGTTCCTGCTTGGAATGCTCTCCCCTCAGATTTCCATGTGGCTCTTTCCTACTGAGTTCATGTCTCTGTTTGAATATCCCCCTTTTAGGAAGACTTACCCTAACACCCTACATGAAAGATCTTCCCCATCCTCACTGTGGTTCTCTCTGGTGCCATTATCCTGCTTCATTTTGTTTTTTTCTAAGACACATATAATAACCATCTGTCCTTTCATATATTGTTTATGATAGTCTCCAGGGAATTACCAAACAGATCCAGAGGAGACTCCCAGTAAAACTAATTTAGAATCTCTCAGAAGACTGTCAGAACATATTGGATCTTGATGGAGGTGGTCTCAGGCTGAAAAGGAATATATTGGATATTCTAG
Seq C2 exon
GAACTGTTGACCTTCAAGGACATATCTGTGGACTTCACCCAGGAGGAGTGGGGGCAGCTGGCGCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAATCTGGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039287:ENSBTAT00000052349:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(2.3=3.4)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]