BtaINT0164594 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14200688-14201972:+
Coord C1 exon
chr6:14200688-14200933
Coord A exon
chr6:14200934-14201833
Coord C2 exon
chr6:14201834-14201972
Length
900 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTTGAATTATTGCATTTCAGGAG
3' ss Score
5.35
Exon sequences
Seq C1 exon
ATGCGTTTTAGTAACACAGGTGAAAGAGAGAATGATGCTGTGAATGAAAGTTCTTTAGATTCTGTGTATTTACAAATGATGAAACACATGCTTCAACAGCAGCAGCAGGATTTTAGCAGTCAAGATTCGGTTTGCAGAAAGAAGGCATTTTCTTTGAATATAAACGAGGCTTCTAAGACTGAGGAAGTTCAGAATATGTTAGGAGAGTATGCCTGCTACAACTGCAGTGTAACAGGAGATTTACAG
Seq A exon
GTGAGGAAATGTCCCAGTGTTTTCTTGGTGCATCTTTTCCAGTACTTATCTGAATTTCAGCAAAAGAATTACCAAAGTCATACAGGTGAAATGATTTTAGTCTTGAAGCCAGTGGCTTTGGGATTTTTCTTTTTTTTTTTTTTAAGAGTTTTCCAGAACTTTTGCTACAGTCACATTTTTTTAAAAAATTCTTTTTATTTATTTACTGAATTTATTTGGCTGCACCAGGTCTTAGATGTGGCCTATGGGATCTTAGTTCCCCAATCAGGAATCACACCCAGGGTCCCTGCATTGGGAGCATGGAGTCTTAGCCACTGGACCACCAGGAAAGTCCCAGTCACATCTTTGACTTAAGACCTTTCTAGAGGTTGTAAACACTAAATTACGTATTTGAAAGTGTCTGGTGCAGTATCTGGACATAAAAGGTACTTAAATTATAGTTCTGTTTCCACCATCACTTCCACTACTACTACTACTATTGTTTTCATTTTTACAATCAGCTCAGTTTTGATTATTTTCATTTCACTATGAGCTCAGTTTTGCTGACCAGATCATTATTAGGGTAAAGGTACATCCTACTTACATTGGTTATGAACAATTCTTACTGTAATTGTGACCAGAAGTAGAGATACATAATGATTCACTCACATCAGTTAAATTTTTCCTACAAAAAATTTAAAAACATATTAAGGGGCCGACAAGAAAAGTTAGTCTTATTTATCATTAAAAGTGCCATGTCATAGCCTTTCCTGCTATACTCAATTTCCCGTTTAAAATTAGAAAATGATTTCATGCATTCTGGAAATCAAAAGAAAAATTTAATATTATCTATATAATTTGCTTATTAGTAAACAGTATTTTTCTGGAATTATTGTAATAACTTGAATTATTGCATTTCAG
Seq C2 exon
GAGGTAAAAGACTCTGAGCTATGCTTCCCAAGTGGGCAGAAAGTAAAATCTGCATGTCTTCCCCAAAGGCAGATTCACATACCAGCTGTTTTTCAGTCTCCTGCGCATTATAAGCAGGTTTTTACATCTTGTCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198:ENSBTAT00000017567:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGAAAGAGAGAATGATGCTGT
R:
TGCTTATAATGCGCAGGAGACT
Band lengths:
345-1245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]