BtaINT0164605 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14207389-14211078:+
Coord C1 exon
chr6:14207389-14207528
Coord A exon
chr6:14207529-14210934
Coord C2 exon
chr6:14210935-14211078
Length
3406 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
AGAAGTGTTTGTCTTTTCAGATG
3' ss Score
7.91
Exon sequences
Seq C1 exon
GAAAGGATTTGATTTTCAAAGAAAACGGTATGGTAAACTAAAGAAGTTTACTACTGTAGATCCTGAATTTTATAATGAACCTAAGAGCAAACTTTATCTTAAACTGAGTCGGAAAGAAAGTTCATCTGCTTACAGCAAAG
Seq A exon
GTGGGTTGATATGATGATGCTGTGACTGAGTCTAGCCTTGTGTCTTAGTTTTATGTGTGGTGTGCTGTGTGCTCAGATTGCTCAGTCGTGTCTGACTGTTTTATGACCCCATGGACTGTAGCCTGCCAGGCTCCTCTGTCCATTGAATTTTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTCCTCCAGGGGATCTTGGAGGAGGGGATCGAACCTGAGTCTCCTGTGTCTCCTCTGTTGGCAGACAGATTCTTTACCACTGAGCCACCTGGAGGCCCCATCTCAGTTACATACAGCTCTGTATGTAAATTCTTTGTATTAAAGAGATTTTTAAAAGTACAGTTGCACAGTATATATCGTGAATTATTGTGTAATGAATTAAACCATTTCTTTTGAAAATAGCATATTTTATTCTCCCCCTCACCCCTAGAAAATATATTTAAAATTTTATTTTTTAAAAAACCTTATTATAGGCTGCCAAAAACTGTTTAATTTTGTTTAAAAAGTCACATGAGCTCTTGGCATTGTATGAACTGAATTTAATATCAAAAATAAGCTGAAAATGTAGAGTTTTTTGATACTTCTGTCACTGCTGCACAATATGACAACACTGGACCCCAGCTTTTGTATATTTGGTGATAAAATTCTTAGTAAATTATTTTTCTAAGGACCTTATGTACACTAATTTGGGTTAATTATTATGTTGGTTTCATGACCTACTCTTGTGATTTATCCTCACCTAGCTTGCTTTAGTTATTTGATTAGTTATTTTAAATGATAAAAGTGAATCAACAAAGCAAAGCTAAATCTAGTACCAATTATAGCTACCTATAGTTCATACAGAGAAACCCCACTAACTTACCTAGTTGTTTCTCCTAAGGCAGTTAGCATTGCATCCCTGTATTCATCAACATCTTGCTTTCCTTTGTATATGTTTATACAAATGAATTCCTTAGAAAGCATATTTTAAGTTTAAAGGTTTTTAAAATGTTACTCAAGTGATATAGTTCTGTAAGTAATCTTATAGAATTTATCTTTTTTACTTACTAGTATAATATATTGCTGCAGTATATAGATATTATTGATGTTGATCTAAAATCTAGTCTAGATCACTTGTGTATATAGTATTTTATTTTGTGACGGTGCCACAGTTCATTCATTCATTCTTCCATCGATGATCATTTGGTTTCTAAGTTTTGCTGTTGTGAACAGTGTGCCATAAATATTCTTATGCTATCCTGTAGATGTGCAAGAGTTTCCTTTAGATATAATCCTAGGAATGAAAATGCTGTTACAGGAAATGAAAATGCCACACAAACCTGTAGGCTCTAGTGCCCAACTGATTTCTAAAGCGGTTACATCAATTTACGCTCCTATCTGGTGGCTCAGCAGACTCAAATGAGCATAAAATGATGTCATTGTGGTTTTAGTTTACATTTCTCTGCTTGCCAGTGATGTTGAATAGCTCTTCATGTGTTTATTAGTTACATATTTCTTCTTACCCATTTTATTATTGTGTTGTTTATAATCTTACAGTTCTTATATATTTTTCATGTAATCTTTTGTTGATATATAAATATATATATAGTGACTAACTTCTTTCATGTATAAAACAGTAATAATAATACTACCTATCTGACATTTAAAATGTCTGCTGACCCAGAACGTGACATAGGTTATTGTGTTTTACTTAAAAAACAAAATTCCCATACATACATGACCTGCTGATGGACTCTGATCTATTTACCTATCCTAGGTTCTTAGCAGTTATGTGGGTTGCTGCCCCATTTCTCATGCTCAAAGCCCTCTCTGTAGCCTTAGTTTTTTCCCCAGAGTTTAACCTCAGGATGGATTCTGGAGTCAACTGCTCCAAGAGTGATAGGATTATTCCATCATCTATTAAATAATGTCCCAGTTGGCCTTCTGTACCCGTAATTCCTTGATTGGTAAGCTTGGAGTTAACCTAGCAATCTGTTGGGGGAAATTCTTTGTGTGTGTGTTTTCAGAATTCCTTTCTATCTGTGCAGGATTAGTGGTTTCCCAGCTTTGTAAGATTTTATCATCCTTTTTGTCCCGTTCCCTTTGTGACTTCCTAAAGCATCTCTGAAATAAGTCTGGCTTTCCCTGCCCCACTGCTGGCTGTTTGCCAGTACTGTACTGGATTTGGATTTCATATTTCTTCTGTCATTTCAATAGGATTTAGGGAGAAAGAGGTTTTTTTCTGTCAACTACTTTGAATTGGAGATCTTTTAAAAAATTGTCAATATTAAATAAAAATGTATTTGCAAATAGGAAATTGCTTAAGTATATGTTACCTCAATTGGCAGATATTTTTAAATAAATTAGGTATAAATTATACTATAGGTCAGCTTTTCCTCAGTTTCCTAAACATATTTCCTTAAAAAAAATAGTTCTGTGGGGGTATTGAATGTGAGTTAATATAAAAATTTTAAAAATTGGTTCCACATTAAACAAATAACCTTAATTCAAGATTTTTCAGTTTTAATATGTGATTTACATTGGACTTACAAAGTAGGAACGTAGTTTTCTTTAAACAGTAATTTTCCCCTTCATATTTATAGTGATTAAGTTATAAAAGAGTGAGTGAAGTTGCTCAGTCGTGTCCTACTCTTTGCAACCCCATGGGCTGTAGCCTACCGCGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGTGGGGTGCCATGTCCTTCTCCAGAGGATCTTCCCGACCCAAGAATTGAATGTGGGTCTCCCGCATTGTAGGCAGATGCTTTACCATCTGAGCCACCAGGGAAATCACTAAGTTATAAAAGTATAGTAGCAAAGACAGCTATTACTATTATAAGTAAGTTTTAGAACAAATGCAGTTGACTCTTTGTAGGTGTAAATTCAAACTGATGGTAGAAATAATGCAGGGGCAGTCTGGAAAGTAGCCTACTAGCCATGAGTGCTCAGTGTGCTGTGGAGAAGAAAGGAGAACATTCATTAATCTGGAGCATCTCTTAACTGGAACTTGTATTCTGTGCACAGATTGCCAGATTTATCTGAGCATGGAAACCATTAAAGGGCAGAGCATGTTTTTAGGCTAATATTCTCCCTTGGGAAAATCAAATGTAGCTATAAAACTGTTTTATAAGAGAAAAATGAGTTAGATGTTGTTTTTATTTATAGTGTTTTTTTAAAAAATAATTACGAAGTAACTTTAAAATCATAAAATTGAGTTAAAATCATGGAAATGAAATGTTATGAGTTCTGCTCTCTGGGTGGAATTATGTCAATTATGATAACCATGTTTGTTTTTTGAAAAACAGTGTAGAACTAAGCACCAACGAAAATCCGAGGTAGCTTTGGATTGAGCATTGTTCTGAGACCTGTAGAAGTGTTTGTCTTTTCAG
Seq C2 exon
ATGATCTTTGGGTGGTTTCGAAAACCCTAGACTTTGAATTGGATACTTTTATTGCATGCAGTACTTTCTTTGGACCATCATCTATCAATGAGGTAGAGCTTCTACCTTTGAAAGGTTATTTCCCTTCGAACTGGCCCACTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198:ENSBTAT00000017567:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]