BtaINT0164625 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016757 | ZKSCAN1
Description
zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:HGNC:13101]
Coordinates
chr25:36947119-36947947:-
Coord C1 exon
chr25:36947522-36947947
Coord A exon
chr25:36947273-36947521
Coord C2 exon
chr25:36947119-36947272
Length
249 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCAACCTGTTTGTCCTCAGGTC
3' ss Score
11.07
Exon sequences
Seq C1 exon
ATGATGACTGCTGAGTCGAGGGAAGCCACAGGTCTGTCCCCGCAGGCTGCCCAGGAGAAGGACGGTATCGTGATAGTGAAGGTGGAAGAGGAGGATGAGGAGGAGCACATGTGGGGGCAGGACGCCAGCCTGCAGGAGTCTCCCCCGCCCGACCCAGAGGTCTTCCGCCAGCGCTTCAGGCACTTCTGTTACCAGAACACTTTCGGGCCTCGAGAGGCCCTGAGTCGACTGAAGGAACTTTGCCACCAGTGGCTGCGGCCCGAGATCCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTCGAGCAGTTCCTCTCCATTCTGCCCCGGGAGCTCCAGGCCTGGCTGCAGGAGTACCGTCCTGACAGCGGGGAGGAGGCCGTGACCTTGCTGGAGGATCTGGAGCTGGATTTGTCAGGACAGCAG
Seq A exon
GTGAGGCGAGGTGACGCATGTGATGTGTGAGCAGCACGTGGACTTTGAGACTGGAGCAGAGAGAGAGTTACTGATTTAAAGCTTGGATTTATAGTCTTTGTGGTACTTAGATCCTGCTCCGCTTGGCTGTTAAAAAAGTATTCTGGCCCTGGCCCTCGCCCAGCCCCTGGCATACTTACTGTCTTTTTGTTTGTCTAAATTCCTGTTTAAAAAGTAATTTACCCACAAGCCCAACCTGTTTGTCCTCAG
Seq C2 exon
GTCCCAGGTCAAGTTCATGGGCCTGAGATGCTCGCAAGGGGGATGGTGCCTCTGGATCCAGTGCAGGAGTCGTCGAGCTTTGACCTTCCTCATGAGCCCACCCAGTCCCATTTCAAGCATTCATCTCGGAAACCCCGTCTGTTACAACCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016757:ENSBTAT00000029042:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=NA C2=0.942
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.8=64.8)
A:
NA
C2:
PF0202312=SCAN=PD(1.1=1.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCACACCAAGGAGCAGA
R:
GGGGTTTCCGAGATGAATGCT
Band lengths:
300-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]