GgaINT0000349 @ galGal3
Intron Retention
Description
NA
Coordinates
chr16_random:204516-205293:+
Coord C1 exon
chr16_random:204516-204776
Coord A exon
chr16_random:204777-205017
Coord C2 exon
chr16_random:205018-205293
Length
241 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CTGCCCTGGCTGTGCCTCAGGGT
3' ss Score
6.94
Exon sequences
Seq C1 exon
GGTCGCACTCTCTGCGCTACTTCAAGACCAGGATGACGGATCCCGGCCCCGGGATGCCGCAGTTCGTGATCGTCGGGTACGTGGATGGCGAACTCTTCGGGAAGTACGACAGTAAGAGCCGATGGGTGCACCCCATCGCAGAGATGCTGCCGCAGGAGGACCGGGAGCACTGGGACACACAGACCCAGAAGGCGCGGGACGTTGAGCTGGTTTTCTGCGGGTTCCTGGGCAGGCTGCAGGTACACTACAACAAAAGTGGAG
Seq A exon
GTAAGCGCGGCGGAAAGGTGCAGTGTGATGTTGCTGGGATGGGGACTCCGTGTGGCAGGGGATCCATGAGGCGTCCGCCAGCCCCACTGAAGTCTGGCCTTGCCCCACACCCGGCTGTGCTGGGCTGTCCATGTGTGGTGGCACTGTCCCTGGGCTTCTCCGTACTTGAACCCACCCACCCCATCCCAGCACACCCCACAGCCCAAGAAGCCCTTCAGCCCCTGCCCTGGCTGTGCCTCAG
Seq C2 exon
GGTCTCATACGCTGCAGAAGATGTTTGGCTGTGACATCCTGGAGGACGGCAGCATCCGAGGGTACGATCAGTATGCATTTGATGGGAGGGACTTCCTCGCCTTTGATATGGACACAATGACGTTCACTGCGGCAGACCCAGTGGCAGAAATCACCAAGAGGAGATGGGAGGAGGAAGGGACGTATGCTGAGAGATGGAAGCATGAGCTGGGGACTGTCTGCGTTCAGAACTTGAGGAGATACCTGGAGCATGGGAAGGCAGCACTGAAAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004617:ENSGALT00000007350:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(49.4=98.9)
A:
NA
C2:
PF0012913=MHC_I=PD(50.0=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCTACTTCAAGACCAGG
R:
CCAGGATGTCACAGCCAAACA
Band lengths:
292-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]