BtaINT0164768 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110968147-110968742:-
Coord C1 exon
chr3:110968467-110968742
Coord A exon
chr3:110968298-110968466
Coord C2 exon
chr3:110968147-110968297
Length
169 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TTAATCTTATTTCTTTGCAGGGT
3' ss Score
10.94
Exon sequences
Seq C1 exon
AATTTGTTCAACAAACCAGCAGGAATGAATTCTTCAGTAGTGCCCTTGTCTCAGGGCCAAGTAATTGTAAGCATCCCTACAGGTTCAACAGTGTCAGCAGGAGGGGGTAACACCTCTGCTGTTTCTCCCACTTCCATCAGCAGCTCTGCTGCAGCTGGTCTCCAGCGTCTTGCTGCCCAATCCCAACATGTGGGGTTTGCACGAAGTGTTGTAAAACTCAAGTGTCAGCACTGTAACCGTCTTTTTGCCACAAAACCAGAACTTCTCGACTATAAG
Seq A exon
GTAAAGTATAGGAGCGTGATAGAGAGTTTGGGTATAAAATGATCAATTTGTAAACTTACTTCTGGCTTTTCACCTTTCAAAATTACACTGTTTCTTTGAAAGAGAGATAAAGATTTCCCCAAGATAAAAGCCAAATGTTTAATTAGTACTTAATCTTATTTCTTTGCAG
Seq C2 exon
GGTAAAATGTTTCAGTTCTGTGGCAAAAATTGTTCTGATGAATATAAGAAAATAAATAATGTAATGGCAATGTGTGAATATTGTAAAATTGAGAAAATTATAAAGGAGACTGTACGATTCTCAGGGGCTGACAAGTCATTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023:ENSBTAT00000027998:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(61.0=27.2)
A:
NA
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTGCCCAATCCCAACAT
R:
TGACTTGTCAGCCCCTGAGAA
Band lengths:
246-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]