RnoINT0169159 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144918829-144919690:-
Coord C1 exon
chr5:144919412-144919690
Coord A exon
chr5:144918980-144919411
Coord C2 exon
chr5:144918829-144918979
Length
432 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TACTCAATATTTCTTTACAGGGT
3' ss Score
7.86
Exon sequences
Seq C1 exon
AACTTGTTTAACAAACCAACTGGAATGAATTCTTCAGTAGTGCCCTTGTCTCAGGGCCAGGTGATCGTGAGCATCCCCACTGGTTCATCAGCATCCGCAGGGGGAGGGAGTACCCCAGCTGCCTCCCCCACCTCTGTCCACAGCTCCTCTGCGGCTGCTGGGCTCCAGAGGCTGGCTGCCCAGTCCCAGCATGTTGGCTTTGCACGAAGTGTGGTGAAGCTTAGGTGTCAACATTGTAACCGTCTCTTTGCCACAAAGCCAGAGCTTCTTGACTACAAG
Seq A exon
GTAAGAGTGGCTCCTCGCTGCTGTGCAAATGCGTGTGCATAGGATTGCGAGTGTGTGGTTAGCTGTGGCTACTCACTGAGAACGTGAGCACAAAACACAGGCAAGAAACAAAGTACAGGTTCACGGCAGAGTTTGAGGATAAACTCAAATACATTCTGTCAATGTATTTTTTATTTTCTGTCTCAAAGTTGCACCATTTGGGTTTCCATTTTTAGATAGGGGCTTACTGTGTAACTCTGGCTGGCCTGGAACTCAGGATGTAGACAGGTTGGTTTTGAACTCAAATAGATCTTGTCTGTCTCTGCCTCCTGAGTGCCAAGATTACAGATGTGCCATTGCCTAGCTGCTTTCCATGTATTTTTGAAGTAAGAAGAATGGAAATTCCTATAATATAAACCAAATGTCTAACTACTACTCAATATTTCTTTACAG
Seq C2 exon
GGTAAAATGTTTCAGTTCTGTGGCAAGAATTGTTCTGATGAATATAAGAAAATCAATAATGTAATGGCAATGTGTGAATACTGTAAAATTGAGAAAATTATAAAGGAGACTGTGAGGTTCTCAGGTGCTGACAAGTCATTTTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(61.0=26.9)
A:
NA
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCCCACTGGTTCATCAG
R:
TGTCAGCACCTGAGAACCTCA
Band lengths:
342-774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]