BtaINT0164799 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007167 | ZMYM5
Description
Bos taurus zinc finger, MYM-type 5 (ZMYM5), mRNA. [Source:RefSeq mRNA;Acc:NM_001195018]
Coordinates
chr12:36514526-36515805:+
Coord C1 exon
chr12:36514526-36514691
Coord A exon
chr12:36514692-36515592
Coord C2 exon
chr12:36515593-36515805
Length
901 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGG
5' ss Score
2.59
3' ss Seq
TAAATTGGTTTTTCTTCTAGATT
3' ss Score
8.44
Exon sequences
Seq C1 exon
AGATGCACCTACCAAAAAAGCTACTGTTGTTCCTCAAGGGGAGTCAAGTGAACCCTTCCCAAAATGTTTTAGTACATCTCATTTGTCTCCCTATGAAGACAGCCAGAATCTTCGAAAAAGAGTTCTGAACAAATCAAGATGTACAATCTGCAATAAACTAACAGAG
Seq A exon
GTCTGGAGTTTTATTTAAGTTACTATCTAGATTAACCAGGATAATTTTAACTTTTAGGTGCTACTGTATGTTCTGCGATCTACCTAATAGATGTGTCCTGAATTCCCTCAGTGAAGTTGAAGGGAAGAATAGGCGTATGTTAGAGTTGTCTCCTAACAAACGTCCCCTTCCCATAGAATGAGGAGTAAACATGTGCTTATGTGGAATTGAATGCAGTCATAAAGAAAGCAGTGGTTTCATGGTGGATTTTGTTCTTATTGGCCACACTAAATGACAATGAATGTAGGTTCAGGACATGAAGGAAACAACCAGTCCTAGAAGAACACATAGAATAAATGGAGTGGATCTATGTAGGTCATCCCACATTTCCTAGGTGTCACTGCTGTCTTCCCAGGCATCCAGGGAGTGCTCAGTTGGCTGAATTTGGTCTGGGTTACCAGGTAGCCATGCAAATTCTGGACAGGATTTTATCTCAGCTACCACAGAGCTGAGCAGAGCAAGAACTTAGGTCCTTACAGACACCATCCTGAAAGTGGGTGATACTGGTGCCCACTGGCCATCCCCCACCCCTGTTTTCTAGGGCAGTGAAGTTTATAATACCTACAAATTCCCTATCCATTTGTTTTAATCAAGTCATATCAAAACCTATCTAATTCATTTTCTGTTATTCTTAAATATCTCTTATTTTACTGCTTTTTATTCTATGAATCTTATTTTTCCTTTTTACAAGAAATCAAAGATAAAAATAAAAGAGTAGTATAATGTGCTTTTTAATGTCTTTTACCTGAATATTTCTTCCACTGAGAAATTACTGGAGATTCTTTGTTGAAAAAAAAAAATAGATATATCAGGTATGACGCAAATCTGGTTGATTTATTTAGTAAATTGGTTTTTCTTCTAG
Seq C2 exon
ATTCGGCATGAAGTCAGCGTTAACAACGTGACACACAAGCTATGCAGTAACCAGTGCTTTAATAAGTACAGGCTGGCCAATGGTCTAGTGATGAATTGCTGTGAGCAGTGTGGCGAGTACCTGCCCGGCAAAGGAGCTGGGAACAATGTCCTGGTCATTGAAGGTCAGCAGATGCGATTTTGCTGCCAAAGTTGTGTTAACGAGTATAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007167:ENSBTAT00000009433:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(40.0=28.6)
A:
NA
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTGTTGTTCCTCAAGGGG
R:
ACAACTTTGGCAGCAAAATCGC
Band lengths:
342-1243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development