MmuINT0180542 @ mm9
Intron Retention
Gene
ENSMUSG00000040123 | Zmym5
Description
zinc finger, MYM-type 5 [Source:MGI Symbol;Acc:MGI:3041170]
Coordinates
chr14:57415441-57416667:-
Coord C1 exon
chr14:57416505-57416667
Coord A exon
chr14:57415648-57416504
Coord C2 exon
chr14:57415441-57415647
Length
857 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGC
5' ss Score
3.9
3' ss Seq
GAAATTTTGTTTTCTTTTAGGTT
3' ss Score
10.91
Exon sequences
Seq C1 exon
AGATTCTCCTGTGAGAACCACAACTATTGTTCCTCCAGTGGAGTCAAGCAAGTCCTTACAAGGATTTTATAATGCATCGCTATCTCCCTATGAAAACTGCCAGAGTCTTAGGAAAGAAGTTTTTACTAAGTCAAGATGTATAATCTGTAATAAATTAGGAGAG
Seq A exon
GTCTGCTCTTCATACTGTTACTATTTAGACTCATAGAAATGTTAATTTTTAAGTGCTAGTGTAAGCTCTGCCATCTATCCAATGTCCATATCCTAAATATTCAGATTGGAAGGACTTTAAAAGTTTTACTTCTGCGTTTTGGTGAACACCTTTAATTCCAACATTTAGGAGGTAGAGGCAGGCAGATCTCTGTGAATTTGAGGCCAGCCAGCCAGTCTATACATAGTGAGTTCCAGGACAGACAATAAATACTATATACTAAAGAGATTTCCCCCCCCCCACACACACACACACACACACACACACACACAATTCTCATAGTGACTGTTTCTTTGGAATTAGTTGTAGCCGGGCATGGTGGCGCATGCTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGACAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGGGAAACTCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAGAATTTGTTGTAATAATTCAGTAGTTTCAGGATAATGACATATCCTATAGGAGTATGTGGAACAAATGGTTTGATAAATTTTCAAGAGGAGTAACCATACATTCAAGCAGTCCTATGTTTTATTTACCTTGTCCCTGGTAGCTAAATCGGATGTTGTGTAGCTTTGGAAGCCATTCAGATCCCAAAGGACATAAATTTACCTGTTACAGCTTTCAAACCACATTACTGCATATTCTAAGTGTAGATAATGATTCCCTTCATCTGCCTCCCAAATACTAATATGAGAAAAGTCTAAATACTATAGGGCAATAAATTGTAAAATACTGTCTTAAGAAATTTTGTTTTCTTTTAG
Seq C2 exon
GTTCGCCATGAAATCAGTGTTAACAGTATAACACATAAGCTGTGCAGTAATAATTGCTTTAATGAATACAGATTGACGAATGGTCTAATAATGAACTGCTGTGAACAGTGTAGCAAGTATATGCCCAAGAGTACTGGGCACAGCATTCTGATAACAGGTCAGCAAAAGAGATTCTGCTGCCAGAATTGTGCTGACGAATATAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040123-Zmym5:NM_144842:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF032929=Pox_P4B=FE(45.4=100),PF064679=zf-FCS=PU(40.0=29.1)
A:
NA
C2:
PF032929=Pox_P4B=PD(46.2=79.7),PF064679=zf-FCS=PD(55.0=31.9),PF064679=zf-FCS=WD(100=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACAACTATTGTTCCTCCAGTG
R:
TTCGTCAGCACAATTCTGGCA
Band lengths:
345-1202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: