GgaINT0106889 @ galGal4
Intron Retention
Description
NA
Coordinates
chr1:178329991-178331157:-
Coord C1 exon
chr1:178330992-178331157
Coord A exon
chr1:178330204-178330991
Coord C2 exon
chr1:178329991-178330203
Length
788 bp
Sequences
Splice sites
5' ss Seq
GAGGTCCGA
5' ss Score
1.56
3' ss Seq
CTTTTATTTTTGTTTTTTAGATT
3' ss Score
11.98
Exon sequences
Seq C1 exon
AGATATAACAACAATGAAAGGTACCATCGTTGCTCAAGTTGATTCAAGTGAGTCTTTCCAGGAGTTCTGCAGTACATCATGTTTATCCTTCTATGAAGATAAACAGAACCCTTCAAAAGGAGCTTTGAATAAGTCAAGATGCACTATCTGTGGTAAACTAACTGAG
Seq A exon
GTCCGATTATTTTGTTTGATTCTATTCTTATCCTCAGTAATGACAGTAGTTCTAATAATCTCAGTTTACAAATAAGAGAACTGAAAATAATGAGATGCAAAATATGATTCAACGTTTTCATATGCAATGAGATAGGCTTAATATTCATGAAGAGAAAATGAAGGGAGAAAATAGTTCAGATTAAAATTACTCCTGTTGACTTCTTGAACTTCTAAGAAAAATGATCTGGTTACTTTCAACAGTTTTATTAGTCATTGAGCCTTGCAGCTGTGACCGGGGTCACAAGTAGAAGAATTGTTATTTAAGAAGTCAAGATATACAGATCAATTTTTTACTGTATAGTTTGAAATATTATGCAAATACTTTGGAGTAAATTCCATATCCTTTGTTTAAAATTCTTATTAATGTAATTTTTTTCCGTGATGCCACTACTGGGCCCAGTGTAGTTCAGATTAGTTCAGATTACACAACCTTTAATGCATATATCTCTCACTATTCTCTACAGGGATATTTTATAAAATTGTCATTCTTCTCAGATATTCAATTATTACATTCTTCTCTGATCTTTGCTTGTAGGCAACGAGAACAAATGTGTCTTAAGGTTTTTTTTCCAGAACTTCAGAAAGAAAACACATTTCTATTTCTGTATTATATGATCTGTCCTTAAATTATTCTGCGAGCTGGTAAAATCTGTTTTTAGTTATTGTGCTTGAATGTAAGATTTCTGGCTTTTCTAAGGCAACTTTATGCTTGTGTGATGATGGAGTACTTTTATTTTTGTTTTTTAG
Seq C2 exon
ATTCGTCATGAAGTTAGCTTTAAAAATATGACTCATAAGCTGTGCAGTGACCACTGCTTCAATAGATACAGGATGGCAAATGGTTTAATAATGAATTGCTGTGAGCACTGTGGGGAGTATTTGCCCAGTAAAGGAGCTGGAAACAATACTCTTACTATTGATGGTCAGCAGAAAAGATTCTGCTGTCAGAACTGCGTTGGTGAATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000043420:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
A:
NA
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0),PF064679=zf-FCS=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCGTTGCTCAAGTTGAT
R:
TGCTTGTATTCACCAACGCAG
Band lengths:
356-1144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]