BtaINT0164738 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36428061-36429187:-
Coord C1 exon
chr12:36429022-36429187
Coord A exon
chr12:36428274-36429021
Coord C2 exon
chr12:36428061-36428273
Length
748 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
GCTTGTTGTTTTTCTTTCAGATT
3' ss Score
10.68
Exon sequences
Seq C1 exon
AGATATAACTACAATGAAAGGAACCATTGTTGCTCAAGTGGACTCAAGTGAATCCTTCCAGGAGTTCTGTAGCACATCTTGTCTGTCTCTCTATGAAGACAAACAGAATCCTACTAAAGGAGCTCTGAATAAATCAAGATGTACAATTTGTGGTAAACTAACAGAG
Seq A exon
GTTTGTATTTCTGTGCTTTATCACTTAGTTCTGATTAATAGGAATATTTATGACTTTAACTGTTAATGATGTATCATCAGTGTGTGTTTCCTTAAAAGTGAGGGTATATGAAATCTGTCTTATAACTATCCCTTTATGTAGTTATAAAAAAACTGAAATATAGCATCAGTTGACTTTTTCCTTGATGTTGGGAGCACTCACAGACAAAACCATAGTTTTTAAACGGTGCTAAGCTTCAAACAAGAGGCAACAATCTTGTCTAAGCAGTGAAATAAGTGGTGGGGATATTTTGGAGGATTTCATTAAAAATATATTATGGTTTTGGCATTTTATGAAATAAAAAGAAATCTGTGTATCCATCCTTATTTGAATTATTTATAATAGTTCTCCCTATTCTGTATAGCAATGTACTTTATTTATATTTCCGTTTGGATTTAGCTAAAGATTTCCAATCTGTTTTAGAAGTTTTATACTACTAGACTGGGTTGCTTCCTATCACTTATAGAGACCTCTAGAGAAGCTTGTATTATGATCCTGGTGGTCCTCCCTGCTTCCTGCCATACGTGTATTCCGTGTGTTTATTAAAGAAAAGTTTAAAAATGAAATGTACTTTGTTTTGCCCTTTTCTTAAACAAGCCTTACATAGAAAAATAGAGGTATTTTCTTTTTGTTGAAGCACCTTGTGACTTAAGCTACATGTTGTGTATTAATTTGTGTTTTAAAATTTTGCTTGTTGTTTTTCTTTCAG
Seq C2 exon
ATTCGCCATGAAGTTAGCTTTAAAAACATGACTCATAAGCTGTGCAGTGACCATTGCTTTAACAGATACAGGATGGCTAATGGCCTTATAATGAACTGCTGTGAGCAGTGCGGCGAGTACCTACCCAGCAAAGGAGCTGGGAACAATGTCCTGGTTGTTGATGGTCAGCAGAAGAGGTTTTGCTGCCAGAGTTGTGTCAGTGAATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403:ENSBTAT00000027190:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
A:
NA
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTGTTGCTCAAGTGGACT
R:
CTGACACAACTCTGGCAGCAA
Band lengths:
344-1092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development