HsaINT0185994 @ hg19
Intron Retention
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20579214-20580726:+
Coord C1 exon
chr13:20579214-20579379
Coord A exon
chr13:20579380-20580513
Coord C2 exon
chr13:20580514-20580726
Length
1134 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
TTTGTTTATTTTTCTTTTAGATT
3' ss Score
10.61
Exon sequences
Seq C1 exon
AGATATAACTACAATGAAAGGAACCATTGTTGCTCAAGTGGATTCAAGTGAGTCCTTCCAGGAATTCTGTAGTACATCTTGTTTATCTCTCTATGAAGACAAACAGAATCCTACTAAAGGAGCTCTAAATAAATCAAGATGTACAATCTGTGGTAAACTAACTGAG
Seq A exon
GTTTGTATTTTTTTTCTTTATCATTTAATTCTAACAAATAGGAATATTTTAAACTTCATTTAAGAACTATTAGATAATCTTTTATCAGTTCCTTAAAAATGAATATATATAAAGACTATCTTATAAATATCCTATTATGTAATCTGATTCTCCCATAGGATCTTATCTTATAAATATCCTTTTATATAATCTGATTCTCCCAGAGGATGATTTCGGAAAAATCATTGTGTTAATTGCCTTGTTTTTCCCTGAGGTTGGGAACACTCACAGACAAAACCATAGTGTTGAGGTTGATTTTTGTCTAGTAATATATTTATTTAAACAAGCAGGCAGACTACACAAGAAATACTACAAATAATTTTGCTGAGAAGTAGAACGATTGGAATATTTTTTGATAACCTCACATTATTAATATTGTGTTAAATAAAAAGTAATCTGTTTATATATAAGTCATTTGAATGATTTATAATGGTTCTCCCCTCCTCATTTTTCTAGAGAAATGTACTTTATTTATAGTTTTTAAAAATTGGTCTAAAGATTTTTACTCTATGAAGTTTAATATCACCACTACCCAAACTTGGTTTTCTGTCATCTTCTGATACCTCTAGAGAAGTTTGTAGTGATGTCACTGATGGGTTTTTTTCTTTTTTCAGTGCCATACATGTGTTCCTGTGTGTATAAAAACAATTTAAATAATTATGAAAATGGGGCCAGGCTCAGTAGCTCACACCTATATAATCCTAGCACTTTGGGAAGCCAAGGTGGGAGGATCACTTGAGGCCAGGAGTTTGAAATCAGCCTGGGAAGCATAGTGGGACCCTATCCCTACCTAAAAGAAAAAACATTAGTTAGGCGTGGTTGTGTGTGTCTATAGTCTCAGCTACTCGGGAGGCTGAGGTAGGAGGATTGCTTGAGCCCAGGGGATTGAGGCTGCAGTCAGCTTTGATGGTGCCACTGTACTTTAGCCTGGGTAATGAGTGAGACCCTGTCTTTAAAAAAAAAAAAAAAATTTTTTTTTTCCTTTTCTCCAAACAAGCCTTATTAGGACATCTTTATTTCTGTTCAGAATGCTTTATTATTTAGCTACTTGTCAGATTGATCTGTTTTGTAAGATTTTGTTTATTTTTCTTTTAG
Seq C2 exon
ATTCGCCATGAAGTCAGCTTTAAAAATATGACTCATAAGCTGTGCAGTGACCACTGCTTTAATAGATATAGAATGGCCAATGGTTTAATAATGAATTGCTGTGAACAGTGTGGAGAGTACTTGCCCAGTAAAGGTGCTGGAAATAATGTTCTGGTGATTGATGGTCAACAGAAAAGATTTTGCTGTCAAAGTTGTGTCAGTGAATACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-ZMYM2:NM_003453:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
A:
NA
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCATTGTTGCTCAAGTGG
R:
TCACTGACACAACTTTGACAGCA
Band lengths:
350-1484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)