BtaINT0164808 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021948 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr3:111242795-111246854:+
Coord C1 exon
chr3:111242795-111243044
Coord A exon
chr3:111243045-111246679
Coord C2 exon
chr3:111246680-111246854
Length
3635 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGA
5' ss Score
3.87
3' ss Seq
CCTTTGTTATTTATTTTTAGAGA
3' ss Score
8.43
Exon sequences
Seq C1 exon
CCCAACAGTTGACCCCAGGCTTTCAGCTTTCTCTTGCATCATCTGGCCCAAATGTATCACTTCCTTCAGTTCCAGCTGTAGCTCTTCAGGTTTTTTGCTCTGGTTGTAAAAAAATGCTTTATAAAGGTCAAACTGCATTTCATAAGACAGGATCTACTCAGCTCTTTTGCTCCACAAGGTGCATCATCGGACATTCTTCGTCTGTCTGCCTACTACCTCCTCCCAAGAAAACCTGTGCAAACTGCTCAAA
Seq A exon
GTATGAGTTTCTTAATTATATCTTTTTATTTTTTTAGTGTATTTAGTTCAAACATACTATCACTACTATAAATTTCTTTAGCACATTTCTTTGGAAATATTTTTTAGCTAATTGAGAAATTTGCAAATTCTAAAGTTTATAAAGTTAAATAAGTGACTTGATGTAAAAAAGGATTGCCTAACCCAGTTTTCCTATGTCTTTCAATTTAAATTTTACTAGAAAGAAACTCTTTGAGAGATTGCAGGATCACTCATATATTGTATGTCTGTTGTAATTGTAGACAACCATTTAAAATTATTTGTTATCTTGAAAGTTACTGAAGTATAGAATGAAATAATATCACCCTTATAATGGTATTTGAAAGTTATTTAATTCTTTAGAAGGTAATTGGCCACAAAAGTAATGCATTTATTCCTGAGAAGTCCTTGTGAGCTTTTGTTGGAGGTCACTGTTGCCTTGTAATAACGCGTAGATGCAGAGAGAGGAAGAAGTAGCAACAGCGTCCTATAAATTTCTTTCTTGGGAATTACTTGGTGGTCCAGTGGTTAGGACTCTGCACTTCCAGTGCGGGGGGCATGGGTTTGGTCCCTGGTTGGGGAACTAGGTAAGACCCTGCGTGCTAGGCATGGTGTGGGCAGAAAAATAAAAAATAATAAAGTTAATAATAATCATAAACTTATCTCAGGAAGTTTGAAGAATTTGGCATGTTTTGCCTATTTGTGAGGTACTGTAATTCTAGGAATATAGTGAGTTGTGGAGTAGTCACTAATGTGGAGCAAGAAACAAGCGTGGTTTTAGATTGTATTAATAGCTCTATCACTTACTAGCTGTATGACCTTGGGCTAGATATTTAACTTTTCTCAGCCTCAGTTTCTTCATGAGTAAGTAATATCTACTTCCTCAGGTTTTAGTGAGAAAGTGTTAGCACAGGACCTAGCACATAGCAAATGCTTAATAAGTGGGATCCTATTATTTTAAATAATAAATTTGATATTATGTATAGTTAACATATAATTTGTGACCTCTGTTTTGTCTTTGGAGACATAACGATAGTTTCTTTATCTGATTGGTTGTGTTGACCTTAGGTATCTAAAAGTAGATCCTATTAAAATGGAAATCCCCAACTAAAAGGAAAGAGAAATTTTAAAATACTTTACTTAAATATTCAGATTTACTTTTATTACAAAATGCCCAATACCTTACTTTAACTTTTTTGTGTCATTCTCATGAAACTGATCTGGAAGAATAAATTCTCCTCTGTCTCCCAGTTTGTTCAAGGTCGTGTCCATTGAGTTGGTGATGCTATCTAACCATCCCATACCATTTCATTCTCTGCTGCCCCCTTTTCTTTCTGCCTCAGTCTTTCCCAGTATCAGGGTCTTTTCCAGTGAGTTGGTTCTTTGTATCAGGTGGCCAAAGTATTGGAGCTTTAGCTTCAGCAGTGATCCTTCCAATGAATATTCAGGGTTGATTTCCTTTAGGATTGACTGGTTTGATCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCTGCACCGTAGTTCGAAAGCATGAATTCTTTGGTGCTCAGCTTTCTTTATGGTCCAACTCTCACATCCATACATAACTACGGGGAAAACCAAATTTAGTTTTCTGATTTTAGGTGTTCAGCTTCAGTATATCAAATATCAAGAGGAAATTAATTAAATTTTACTTTATTTTATTTTTTGACCAAGTCACACGGTACATGGGATCTTAGTTCCACCCGAAGATTGAACCCATGCCCCCTGCAGTAGAAATGTGGAGTCTTAACCACTGGGCCGAGGAAGCCCAAATTAATTAAATTGGAAAGAATAGAGCATGACTTATACATCCAAATACATATTATTTTCTTAAAAATAGTCACTCTTGTCATTGGCTTTTTACCACAGTACTGTTGTTGAGAAAAATTTTTTGTCTCCTGATCTGGCATTGCCTTCAGAGACTGTGAAACATTCCTTTAGGCTAAGTTAGGTGATAAATCTATCTTTTCAGCTAGGGTTTGATTTTTGCAAGTTGCCAGAAGTTACTTGATGTCTCCAACTGACTGTTGTAGATGATTAAATTGAGTCATACTGTTAAACATGATATCTGACTATAAAATTAAGAAGTTGTGCTTAGAGTTCTTATAAACTAAATGAGAAATTAGAGAAAGTGTTTGAGCCATGTTGTTGTTGGAAGAGGTATAGTTTTTCTAAGGTGAATGTTTAGGTGTAGCATATACATTTGGATGTGTAAGGTTTAGAATGCATTTATATTCATGTGCACAGATTTTCATTAAAAAGTCATTCTCATTGGTATATGTATGTATACATGGCACTTGTAGGTTTTCATTATTAAATGAAATTCTTAATTGCTTTGATTTTAGTAGAAGAATCACTTTTCAGTATTAGTATTTCATGTGCATGTAAGCATATCCACTTGGTCCTCAAGATTGACTATTTTTTTATTAAGGCTGAGTTATAGAAGATTAAAGTAGTGCTCTGTCGCCTTTGGAATTCTTTTGTAGTTTACCATAGAATAGTTAAGTGTGGTGAAGGTGCAGGATGGAAGGTAGAGTAGTGAAATGATGAGCTGCGTAGATGGTAGAATCAGCGCTTATCCAGCTTCACTGCTTATCCAGCTGAATGACTTTGACAAGCTATTTAACCTTTCTGATGTGGTCTCCCAATAATACTTACCTTATAGAGTTTTTTGTGATCATTAGATTGGATAATTTGAGTCAAGAGAACAATATCTGGCACATAGTAATTACCCAGTACGTTATTATAGTACATAATATTATTGCCAGTATTATTCTTTACTATGTGGCCTGCACTAGTGTTTCTAATTAATGACTATTTCCTTCAGTTTTTTATACTTGTCAGAAGAATGGCAGTAACTTAGCCTCTGTTTTTACTGGCAGTGCTTATTGTAACAGTGAGCTCTCACAAAATAACTCTAGGAGTCTCCTAGAACAACTCAGTTATTTCTGTTCTTTTTGTCTCATTCTTGTTTCCATCTGTCCTCTGATACCAAGCCTTAATAACCCTTGTTTGTCATTTGTTTCTTGGATCTCTTCAGTTACAGTGAAGTTTTCTATATCATGCTAATTTTTAATGCAAATCTTTGATAATTTGTTTCTCAAATCTTACATTTGAATAAAAAATTTTTTCATTCGTTGTTTCATTTATGCTTCTACTCTTGGCAGCTGCTGGCTCATAGGAGGACAAGTGTTTTGTGGTCTGGTTGTGGGATGGACACTTGTTCTTTTTGGCTCCAGTAGATGAAACTTGGTTGGAACTGGAAGCCTCAATGTTTTTTTCATGAGCATCTGGCTGGATATCTTTTAAATGTAATTCTCCCTCAACACGTCTATAAATTAAGTTTTATGAACTCCATTTTATACATGAGGAAATTGAGCCAGTAATTGCCTGTTGCCTCACTCATTGTCCCTCAGCTGAGAAGTAATAGAACTAATCATCAAACCCAGTTTTCCAGAAGCCTGTCGCAGGGCCAGCCATTTTCTGCTTATACAATAGCTGTCCTTAGTAAATGTAGTTATTTTAGCTCACAAAGAGGAAGAAATTACAATTAGGGAGAACACATTTCATTTTGCCTTTGTTATTTATTTTTAG
Seq C2 exon
AGACATTTTAAATCCAAAGGATGTGATCACAACCCAATTTGAAAATTCCTCTCCTAGCAAAGATTTCTGCAGCCAATCATGCCTTTCTTCTTATGAGCTGAAGAGAAAACCTGTTGTTACCATATATACCAATAGCATTTCAACTAAGTGCAGTATGTGTCAGAAGAATGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021948:ENSBTAT00000029263:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=46.4),PF064679=zf-FCS=PU(27.3=14.3)
A:
NA
C2:
PF064679=zf-FCS=PD(70.5=52.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]