BtaINT0164910 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039782 | ZNF12
Description
zinc finger protein 12 [Source:HGNC Symbol;Acc:HGNC:12902]
Coordinates
chr25:39051002-39055067:-
Coord C1 exon
chr25:39054972-39055067
Coord A exon
chr25:39052840-39054971
Coord C2 exon
chr25:39051002-39052839
Length
2132 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TTAATCTTGCCTCTTTTTAGAAG
3' ss Score
8.91
Exon sequences
Seq C1 exon
GGTGTCACATTATCAAACCAGAAGTCATCACCAAATTGGAGCAAGGAGAAGAGCCGTGGGTGGTGGAAGGAGAATTCCTGCTTCAGAGTCACCCAG
Seq A exon
GTGTGTGAGGGGGGTGGCAGTAAGGAGGGTGGTCACTCAGGAGTGTTTTTCCCTGGAGCTTTTTAATGGTGCCAAACCTGAGAAGTGACTGAAGAGTTGTTCTTGCACTCCGGCAACTCGAATCTCTCTCCCTAAGGCTTTTTCCTTCCCCACAGCAGCTTGTGTTGGTAGAGCTTCCCACTCTGGTTTCTGCTCTGAATCAAAACCTGCTCGCTTCCTTCCTCCTCTTAAACCTCAGAACTTCTTATGGCATTTTGTTGGCAGGCATATATATCGTTTGTCATTAGAGATAACTCCTGACTCTCCATGTCCTCATTAGTTTCTTTCTTCTTTCCCATGAAATGCCTCAGGCTTGTTTCTGTCCCTGGCTTCACTTCTCACTTCTCTTTCTTTGAGGTCAGAGTTCACACCCCCATCCTGTGCATAAACCAGTGAACTCAGTTCACCTGTGCTGTCCTGATCACAGGCGCTGGTCATTCCTGCTGGAGTTTGGTGATAGCATAACAGGGTCTCCCTATTCCACCAGATGCTCACTTTCATCTTGTCTCTTACTTTCTGTTCTGTCGGCAGTGTCTTGAATCATGTTGTGTCTGAGCAGGTGCTCAGTCAAGTAGGAGACAGAGAAATGAGTCCTGATTCATTTACCACCCCCACCCTGCCCCCTCCAGAAACATCCCTGAAGGGTCTGCCTCACCCTCTGGTGGTTTATTCCACAAGCTCTTTAGAAGGTCCTCCTATCTCAGGTATTTAAGGCTTTTATGTGTTTCATGCTACTCTGTCTACCTGTTGCTGGTTCAGTGTTTCCTGAGAGAGTGCAAATCTCATTGGATTTGCAAGATGTGTTCCCCTGACTTCTGAATCCATCTTATCACTAGTCTCACAGGATGAGCCAACAGCCATTCCCTGTTGATTCCTAAAGGCAGTTTAAATTCCTCTTCCTTTTAGAATCATACAATATTGTCCCTATGTTGCCCAGAAATTATAATTTTTTATTGTTTCCTAAACTTCATTTGGTCCACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCTCCTTAGAGTTTTCACTTTCAGCTCTAATACCAGTTTCTTCCTTCCCTCGACTTCAACTCCATCTCAAGGTGATGCTTTAGGAAAAAAATCTAGGTCTGATCAAGAAATCTGTTGACCGTGTTTTTTGCTTGGGCTTCTCCACCCACCCTCCTCAAGTTTTGATAGATTCTGAGGAAACCTATCTTTTCTCAGGTTTTTGCCTCAGGAAAGATAGATTTTGAGTAGATCAAAGGCTGGAAGTCAGGCAAATTTAGTAAAACAACAGGAGCAGAGACTTGCAATTGAATATAAACTGGGGCATAGTTGGTACCAAACCATCTCAGTGTAGGTGGTAGCACCGTAGACTGTGCTCTTTATCTCCATGCGATATGAAACGACTTGGTGTGAAGTGGAGACCTGCCTCTCGCACAGTCCTCCTGGCCCTTGTGCAACAGCTAAACTCATTGTTCCCCCATCAGTTGACCTGTTTGCTGTGAGCCCTTTCATATCTAAGAATCAGGCATTTATCCAGCATCCTCTGTCTTCAGATCATTGCTCCACGTTTTATTTTACCTTCTGTACTCAGCTTTGAACAAAATTTTGAAATATTAATGTGTGCATGTACTCAGTCATGTCTGACTCTTTGCAACCCCATGGACTGTAGCCTGCCAGGCTCCTCTGTCCATGGCATTTCCCAGGTAAGTGTACTGGAGTGGGTTGCCATTTCCTCCTCCAGGGCATCTTCCTGACCCAGGGATCAGACCTGTATCTCCTGCACTGCAGGTGGATTCTTTACCGCTTGTTTTTATCAGCTTTCTTCACCACTGGAGATCATGGAGCTTGTGTGTGTGCATGTGCAAGTTCATTCCAAACCAAAATAATAAGGGGGAGAAATACACTTGGAATGGTTTTCACCTGTCCAAGAAGCTAGCACCTGTGCCACAATGAAATGCTTGTGTACAAGTCACATGTCATTTCTTACCTAGGAAGTTGCATAAAAATTGGTTAATCTTGCCTCTTTTTAG
Seq C2 exon
AAGAAGTCTGGAAAGTTCATGATCTGATGGAGGGAAGCCAGGAAAATGAAGACAAACATTCAAGGCAAACTGAATCCATTAACAACAAAACCCTGCCTGAAGGGAGAGGTAATGGTCTTGGTAAGACTTGTAATGTGGAAACAAGCCCTGTTTCTTCAAGAAAAATATCCTATCAGTGTGATTCATGTGAAAAGAGTTTAAAGTCTATTTCAGAATATATTAGTAGTGATGGCAGCTATGCAAGAATGAAACCTGATGAATGTAGTGCTTGTGGGAGATCACTTCTCCATGTGAAGCTTGAAAAAATTCATCTCGGAGATAAACCTTATGAATTTAACCAAAACAGGGAGGCTTATGCTCTAAATGAAGAAAGTATTTATCAGAACATTCACATTTTGGAGAAACCCTTTGAATATATCGAATGCCAGAAAGCCTTTCAGAAGGATACAGTGTTTGTTAACCATATAGAGGAGAAACCCTACAAGTGGAACGAATCTGAAATAGCCTTTCTCCAAATGTCAAACCTCAGTGTGCACCCAACAACTCATTTGGAAATGAAACCCTATGAGTGCAACGCATGTGGGAAATCCTTCTGTAAAAAGTCCAAGTTTATTATCCACCAGAGGACTCACACAGGAGAGAAACCTTACGAATGTAATCAGTGTGGGAAATCCTTCTGCCAGAAGGGCACCCTCACTGTCCATCAGCGAACACACACAGGGGAGAAGCCCTATGAATGTACTGAATGCGGGAAAACCTTCTACCAGAAGTTACACCTCATTCAACACCAGAGAACTCACTCAGGAGAGAAGCCCTATGAATGTAGCTACTGTGGAAAAGCCTTTTGCCAGAAGACACACCTCACACAGCACCAGAGAACACATTCAGGAGAGAGACCCTACGTTTGTCATGACTGTGGAAAAACCTTCTCCCAGAAGTCAGCCCTTAATGACCACCAGAAAATTCACACAGGCGTGAAACTCTACAAGTGCAACGAGTGTGGGAAGTGCTTCTGCCGCAAGTCTACCCTCACCACACACCAGAGGACACACACGGGAGAGAAGCCCTATGAGTGCAACGAGTGTGGGAAGTTCTTCTCTCGGCTGTCATATCTCACTGTGCATTACAGAACTCATTCAGGAGAGAAGCCCTATGAATGTAATGAGTGTGGGAAAACCTTCTACCTTAACTCAGCCCTCATGAGACACCAGAGAGTCCACACAGGAGAGAAGCCCTATGAATGCAATGAGTGTGGAAAGTTATTCTCCCAGTTGTCGTACCTCACCATACATCACAGAACTCACTCAGGAGTGAAGCCCTACGAATGTAACGAATGTGGGAAGACCTTCTACCAGAATTCCGCCCTTTGTAGACACCGGAGGATACATAAAGGAGAGAAGCCCTATGAATGTTACATATGTGGGAAGTTCTTCTCGCAAATGTCATACCTCACAATACATCACAGAATTCATTCAGGAGAGAAGCCCTACGAATGTAACGAATGTGGGAAAACCTTCTGCCAGAATTCAGCCCTCAACAGACACCAGAGGACACACACAGGAGAGAAAGCCTATGAGTGTTACGAGTGTGGCAAATTCTTCTCTCAGATGTCGTATCTCACTATACATCATCGAATTCATTCAGGAGAGAAACCTTTTGAATGTAACGAATGTGGAAAAGCCTTCTCTCGGATGTCATACCTCACTGTACATTACAGAACTCACTCAGGAGAGAAGCCATATGAATGTACCGAATGTGGGAAAAAATTCTACCACAAATCAGCCTTCAACAGCCATCAGAGAATTCACAGGAGAGGGAACATGAATGTACTTGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039782:ENSBTAT00000053303:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.064
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]