MmuINT0178600 @ mm9
Intron Retention
Gene
ENSMUSG00000029587 | Zfp12
Description
zinc finger protein 12 [Source:MGI Symbol;Acc:MGI:99157]
Coordinates
chr5:144001633-144009649:+
Coord C1 exon
chr5:144001633-144001759
Coord A exon
chr5:144001760-144005740
Coord C2 exon
chr5:144005741-144009649
Length
3981 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TCATTTCTGCCTCTTTTCAGATG
3' ss Score
11.91
Exon sequences
Seq C1 exon
GGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGCAGCTGGACCCTGAGGAAAGGACGACATACAGGGATGTGATGCTGGAGACCTACAGCAACCTCGTCTCCGTGG
Seq A exon
GTGAGGACCACTTGCTTCCCAGGTGCTCGGATGTGGGACGCCCATCAGAGCTGATGCCTTTAGCTTTGAGGTGACTGTGAGCAGCTTGTCCTGACTCCCAGAAGGTCTTGACCTTTCTGTGAAACTAAACCCCCCGGGGCTCTTGGGCTGCACTGCAGACCCAGGATCGCTTTCCAGCACGGTAGAAACCCCGAAGCCACGCAGGCAGGCTCAAGTTCTTTTTCATTTCTCATTAACAGGGTATGACATTATCAAACCGGATGTTATCATCAAGTTGGAACAAGGAGAAGAGCCATGGATAGTAGAAGGAGCGTTCTCGCCTCAGAGCTATCCAGGTGTGTTAGTGGAGGCAGAGAGCAGATGGTAGCTGGGGAGCTCCTCTGAGGAACAGTCTCCTCATCTTTATAAGTTACTGAAGGCAGTCAGTCACCCGTGCAGGCTTCTTCCTTCCCCCTGGCTCCCACTACCCACAATCAAAGGTTCCTAGCTGGCTCTGGGAGGCGCGTATCTCAAAACTGAGCACTTGAGGCAGAGCAGGGGGATCTGTGAGTTCTAGGTCATATGGTTCCATACACAGCAAGTTCCAGAACAGTCAGGACAGCGAGACCTTGGAGTTTTGGGGGGGAGGGGGAGAAGGAACAGCAGTCAGTTCCTTTTTTCTCTACACCTTGGACCTTAGCATTTTGAGTTACCCAAAGAGAGAACGAACCTAAGTTGCTAGGGTTGAGCCGCAAGCTCCTTTACCCAGTGAGCTATTTCACCTCCCATCTCTTTATTTCCTTTGAGGTCAGGTCTATCCTAAACCATGCGACTCCGGCCTCTCCCTCTGTTGGCACTTTTGTTCCTTGGCAGTGCCGGTCATTGTTGAAACCCAGTCCCTCAGCTTGTACAGTTTTGCTTGGCTTGTTTCGTGTTTTGGTTTGGTTTTTCGAGACAGTTTCTCTGTGTAGCCCAGGCTGTCTCAGAACGTGCTCTGTAGACCAGGCTGGCCTTGAACTCAGAGATCCGCCTGCCTCTGTACTGGAAGTAAAGGTGTGCGCCACTTACCGTTTTACTCCCAAGCCCTTGAATGGTGCTCCCTTGTATTGTGTCCGTAGATGGCATTTGATTCATCAGTCTTCCCACCTTAAGTCTCTGGGAAGGATGGTGTTCCAGCTGTGTCCCCTGTCCCCTGGCTGCGTCATTTTCCAGAGGCTGCCCTGTCAGCTCACTCAGGTTTTGTTTGCCCGTCCGTTGCTCTGCTGGCTCACGCTGGGGTCACAGCCACTCTGCACAGTTCCTGCCGGCTGTGTGTGTTCTTGCTGTGTGTGAGAGTTGATCGTGAACTCTCGCAGCTGATGGTGGCTGAGCGCTTTTCCCGTTTCCCTTTGCGGCTTGGTCATACTCTCCTCATTTCCCACGTGGCCCTCAAAGTTTTCTAAGAATATCTGCTTATTGGTGGAACTGGTCTCTAGAATCCTGGGCTGTTTTTTCCCCTTAGGGAAGAGCTTACTTTACCCTCTCTATACAGTTGTAAGAATGAAGGGTGTCTGGGTTTCTGTAAGTCCTAATTGGCTCGAACCGACTCTTCATCTGAGATAGCCAGGGAGGGAGAGATATCCTTTACAAAATAAACCTATGTAAGTTCCTTCTCTCCCAAGGCTTAGCCCAGCACTGCATCTGTATTACCTATAAGAAGTAGTTTCCTGAAACACTCGCTAACCTCCTTTGGTCCGTGGTCTTAGCGTCTTCTCTTCATGGATTTTTCATGTTTGCAGCTGTATGTTTCATTAGAATCGGCTGTGCATCCCCATGTAGTAAGGTTTGTTAAGTCTGAGCTCGAGTTCCCAGCCCTGGGAGTGTGGTCCTCCTGACTCTACCATTGCTCAGTCTTTCCCTTGCAGCAGTAGGGATGGAGACTTGTAGGCACTGGGATACCAAGAATTTCTTGGCTATCCCAGAAATCCTAGCTAGGGCAGTGGCACTGTGATCTGTGTCTCAGACGACTTGATAGGACATAACGATGTATACAGTATTGATCTCCAAAGCAAATCACAGTTCCCGTGTATTGCATGGCCCTCTTTGTTCAATTAGCAGCTTGTTTTTCCTGGAACAGAATGTCGTCTTACTTTATTTTATTTATTTTAGATTTTTTCTTATGTATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGGGCACCATGTGGTTGCTGGGAATTGAACTCGGAACCTCTGAAAGAGCAGTCAGTGCTCTTAACTGCTGCCCCATCTCTCCAGCCCCACGGGATGCTTGAAGCGGACTGATCCTAGCTTCAAGTCATCATTGAGTCCAGGTGGTGACGTGTTGATTTTTTGACACTGGTGGATTCTGGGAGGCTGTAAATTCCAGAGATGAAGTTGATGTGTGACTTATTCCACATGACATGGAATAAGATTGGTCTATCCCATAATTTCTAAGATCAATGAGAACAGCATCACCATTGGAGAAGTACACTGAGGGACCCTGTTCTTAAGTCCATGCTCTGTGAAACTCATGTTCAGAATTAGGAAACCATGGTGGGCTGTGTAGGAATGGGCGTAAGAGTTCTTTTCTGTTGCCATGACCGACTAAGACAACGTATGAAAGAAAACCCACCACTGTCACAGCCGGGAGCACAGTACCAGGTAGGCAGGAACAGCAGCTGAGAGCTCACAGTTCAGTCCAGAGACAGGAAGCAGAGAGCTCACTCAAAATGGCACCGAAAGCTGCCTCCTTCAGGAAGGCCACACCTCCTAATCCTCCCCAGAAGACAACAGCTGGGCACCAAGCATTTAAAAGCCCGAGACTTACAGGGGACAGTTCACTCAGACCTGCACAGGGGACAGTTCACTCAGACCCGCACAGGGGACAGTTCACTCAGACCCGCACAGGGGACAGTTCACTCAGACCCGCACAGGGGACAGTCCATTCAGACCTGCACAGTGGGCTGCAGCAGCTACTGGTAGATTAAAGTAGGAAAAATCGCTCGAGTGATCTTGAGTATGTGTTTTGTGTGTGTGCTGTTCTGAGCGCTTCGACTCCTGCCATCCCACAGCAACCCTGTAACGTGAAACCCATCGTCTGCTGACGTGGGGACACTGACTGTAGACGATGTTAAATGCCTTCCCTTGGGAGATCACATCAGTTCACACGATATAGGGCCAGACGGGAACAGTAGTGAATTTCGTGGTCAAATTCGCTCAGTCTTCAGCCACGGCATTGGCAGAATTGTTTTCTTAAATCAATGCTTTTAGTGGATGACATCTTCTGTGCCATCTGCTGCTTCCTGTTCCACAGAGGTGGTCCAGAGCTCTCCTTCCTAGTGAATGCCTAGGTCCCAGGTTCTAAACATGAAAAAAGTTTAGGTGTAAAACTTACGTGACATTATTGTGGGATGGAAACTCAAAATAGCATGGAAGGATGCAGAATAGAGACATGGCCCAGAGTGTCAGTGTGGTCAGCCATGCCCAGAGATGTGGCTCAGCGTGTGTGTGGTCAGCCACACCAAGATGTTAACGTCTCTCCCAGTGTGAAGTGATACAGGGAGCAGTGCTGGTCGGCGCCAACCGAGGCCCTGTTTCCATGTATCTTGTTCTCTTTCTTGTGCAATGGTGCTCCTGGCTGGCTGTCCCTGGAAGGCCCTCCCTGTTTGCTGAGATTTCTTCCGTCGGCCTTTTTTCCAGCATTGCATTTACCAGTTATCGCTCTGGGTCTGTGAACAAAATCCTCCAAAGCAGCCTGTATCCGAGGTGCTGGGCTTCATCCGGTTTCTCTCCTTCCCCACCAATGGGATCTGTCCATGTTATTCCAAAAGAATAAGCAGAGTGATCTAGCCTTAGCAGCGCTCTGAGGCTAGACACCGGATGTGAGGCCCTGTGTCAGTCTCAGGCCGTGCCTTACGTAAGCAAATATACAGACGTTGGTTCATTTCTGCCTCTTTTCAG
Seq C2 exon
ATGAGATCCGGCACATGAGCAGGCTGATGGAGGAGGACCAGGGAGGTGAAGAGAACCAGTCAAGTTCAGCTGTGTTCAGCTACAGAAGCCGGGCTGATGCCTCTAGTAAGGCCACTGATGGAGAAACAAAGCCCTTTCCCTCACAGAAGGCCCTCCCTCAGTGCAACTCCTGTGAGAAGAGCCTGATGTGTGTCTCGGCGTTCATCCGAAGCGACGGAAGCTACGCAAAACTGAGGCCCAATGTGTGTGCCGGGTGTGGGAAGCCCCTCCCCTGCAGCAAGCCCGAGGAAACACACCCTGGAGGTGAGTCTTACGAATTTAGTGGGGATGGAGATGAGGACCCTCTCGGTGAAGAAGGCGTGTATCAGAAGGGTCACTTTTTGGAGGAGCCCTTTGAATACGTTGAGTGCCAGAAATCCTTCCCCAAGGGCACTGTGTTTCTTAATCACCTGGAAGAGGAGCCCTGCGACTGGAATGACGCTGAGGTCGCTTTCCTGCAGACGTCAGACCTCAGTGCCCACCAGGATTCTCTCATGGAAATGAAGCCCTACGAGTGCCAGCAGTGTGGGAAGTCCTTCTGCAAAAAGTCCAAGTTCGTCATCCATCAGAGGACTCACACAGGAGAGAAGCCCTTCAAGTGCAGTCAGTGTGGGAAGTCCTTCTGCCAGAAGGGCACCCTCACCGTCCACCAGAGGACGCACACCGGGGAGAAGCCCTACGAGTGTACCGAGTGCGGGAAGACCTTCTACCAGAAGCTGCACCTCATTCAGCACCAGAGGACCCACTCGGGCGAGAAGCCCTACAAGTGTGGCTACTGCGGGAAGTCCTTCTGCCAGAAGACGCATCTCACTCAGCACCAGAGGACGCACTCGGGAGAGAGGCCCTATGTTTGTCACGACTGTGGCAAGACGTTCTCTCAGAAGTCAGCACTCAATGACCACCAGAAGATCCACACGGGCGTCAAACTCTACAAATGCAGCGAGTGTGGCAAGTGCTTCTGCCGCAAGTCCACGCTCACAACCCACATGAGGACGCACACGGGCGAGAAGCCGTACGAATGCAACGAGTGCGGCAAGTTCTTCTCCAGGCTGTCGTACCTCACCGTGCATTACAGAACCCACTCGGGGGAGAAGCCCTACGAGTGTGCGGAGTGCGGGAAGTCCTTCTACCTGAACTCAGCCCTTATGAGACATCAGAGGGTGCACACGGGGGAGAAGCCTTACGAGTGTAACGAGTGTGGGAAATTATTCTCGCAGCTGTCCTACCTCACCGTGCATCACAGAACTCACTCAGGAGTGAAGCCCTATGAGTGTAGCGAGTGTGGAAAGACCTTCTACCAGAATTCAGCCCTCTGTAGACACCGGAGAATTCACAGAGGGGAGAAGCCCTATGAATGCTACATCTGTGGCAAGTTCTTTTCTCAGATGTCTTACCTCACGATCCATCACAGAATTCACTCAGGGGAGAAGCCCTATGAGTGCCGCGAGTGTGGGAAGTCCTTCTGCCAGAACTCAGCCCTCAACAGACACCAGCGCACGCACACGGGAGAAAAAGCCTACGAGTGTTACGAGTGTGGGAAATGCTTCTCCCAGATGTCTTATCTCACTATCCATCACAGGATCCACTCGGGAGAGAAGCCCTTCGAGTGTAACGAGTGTGGGAAAGCCTTCTCTCGGATGTCGTACCTCACTGTGCACCACAGGACCCACTCAGGAGAGAAGCCCTATGAATGTACGGAGTGCGGGAAGAAATTCTACCACAAGTCCGCGTTCAATAGCCATCAGAGAACTCACAGGAGAGGGAGCGGGAATGGGGTTGATTGATGTGGGACGGCTCCTTTACAGCCAGACTCAACCGTCTCAGTAAGCTAGAAACCCCTGTCTGCCGCTGAGCCCTGCTGTACGTGGCCCCAGGTACCCATAGGCTCCTTCTCTGAGGAGTCAATCCTCCGAAACTACATAGGGAAAAGGGTTTCTCTGTACTGAATGTGTACAGAATATTTTTTGTCTTTCTTCCCTAAGTAGTACAATATAACAGCTCTTTATACTGCGTTTATATGGTACTAAGCGTCATAGATATTCTAGAGGCGAGTTAAGTACAGAGGGTGTGCACAGGCTGTCACGATGTCATCTTACACAAGGGCTTACTCTGCAGACGCTGGTGTCCCGCTGGTCTCAGAACCACACTCGGGCACACCGAAGGATACCTCTGTCAGAGAGCTCACGCAAATAAGCATGAGCAAGTCTGTGAGAGATAGATTCATCAGAAACCCACAGGGCAGGAAGCACAGTTGTGAGAAGAGCACACAGCAGGCTACACAGGAGTCAGAATGTATAAATCCGTCTCAGCATAACTTAAACTGCTCATCAGGGAACTGGCTCGACTGAAGGAGCGGCGGAAGCACACGCCTTTGGTAACTGCTAATACTAAAGGACATTTTTGTAAAAATTAAAAGAAGAGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTTTTCCAGAGGTCCTGAGTTCAAATCCCAGCACACACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATATACATAACATAAATACATTTTTTAAAAAATTAAAAGTAATACTCTGCTAGAAATAAGTACACTCTATAACTGCAGGATGTAAAGTTGCCAGTCTGGTTAGCTGAGTTTGCCACACTAAACTGGTAAGTGATTCCCTAGGGGCAAAGGGCTTGGGGGTCTCTTGTTTTTGTTTCAGTAGCCATCACAGAATTCTCATGGTCAGTTTTAATCCTGTTTGGAAAAGTGTTGTGTTGTTACTTTGTAACATATGGAGAGCTTACCCGTTCTAAGGAAGGTCCTCATCCTGTCATTATGTTCATATGCACTGTCACTGAAGTTATGAACTATGCTTTTTCTCATATTCTTCCTTGGGTTTTCAAATGCATTGGGTCATTGTCACAGGATTCTATCCTCTGTAAAGAAGCCAGGTTATCCCCCGCAACTATAGCAAAGATGGAATGTATCTAGAAAATAGAAAACTCTGAATAGATCATTTTAAACTAAGCCAGAAGTCTGTAAAGGTGAGGAATAGCCTTAGCACTCCTGTACTCTGTACAACAAAGAACTAGACTTAGGGTGTTGTCATTTCTACACGCCATTGGCTCGCTTGTCTCACGTGGATGCTTACGCGTGTGTAGAACTCAATGGCTGGGTAGCACGGTACGTGCTGTGGTTACCGCCGTGCTCTGTTCTCCTGTCCCTCGGAAGTGAGCGCACACACAGCGGACTGTGGCAGACTTCACCCAGTGCCTTCTGCCACTCCCTCCTTGGCTTTCGTATGTCGTCAGAGTGCATTCCTCCTTAGATGATGGGACGCAGCTCCCGGGAAGTTTTCATTGTGGGGGTGAGCCTTTCTCAGAACCTTGGACCCAAGTCCAGAGAGTTCGAAAAGGTCATTTCTTGAAAGGGTCTCCTCAAAGCAGCAGAGCCTTAGTGAACATAACCTTGTCTGGATGCGGTGCCTGATGATGACTGCCAACCATGTATACCCTGTAGTCATGACGACAGAAGGTCGGAATGACGTCACAGAGCCACTAAAGCAACGTGACCTGTAGCCACTCCGTGTCTGGACTGTGGGTTTTGTTTTTTGTTTTTCTGAGAGACTGTTTCTAAACCAGGTGACTTAGGGACATTCTGTTAATAACAACAGGACAGCCTGGTGCCCCATTACACTCTGTAGGAGTTATGCAATTCAGAAGTGGAATTTAGGAAATCATTTATTTTGATGTGTCAATAGAGAGATTTATTGTCTGTAAATTTGGATGTAAATAATCTGATCATTGAAAATGAACTTGAAACAATTGTGTATGCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029587-Zfp12:NM_177681:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=NA C2=0.144
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: