HsaINT0186177 @ hg38
Intron Retention
Gene
ENSG00000164631 | ZNF12
Description
zinc finger protein 12 [Source:HGNC Symbol;Acc:HGNC:12902]
Coordinates
chr7:6697339-6697811:-
Coord C1 exon
chr7:6697685-6697811
Coord A exon
chr7:6697435-6697684
Coord C2 exon
chr7:6697339-6697434
Length
250 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CTTTCATTTCTCATTAACAGGGT
3' ss Score
10.37
Exon sequences
Seq C1 exon
GGGCCAGTGTCATTCAAGGACGTGGCTGTGGACTTCACCCAGGAGGAATGGCAGCAGCTGGATCCTGAGCAGAAGATAACTTACAGGGATGTGATGCTGGAGAACTACAGCAATCTAGTTTCTGTGG
Seq A exon
GTGAGGATAGCTTGCTTTCTCAGTTGCTAAAATATATGGGATTTCTCACAAATTTTATGACTTTAACTTAAAATTTGATGGGACGAATGTGAGTAATCTGTTTTTGGGCACCAGGCAGGGCATTTTGGTCTTGATCTCCCCCGTGAAAAGTTCTGATTTTGATAAGACACAAATGGAATTTTCCCTGTATGACAGAGACCCTGAAGCCAACCGGCCTGGGCTCAAGTTCTCTTTCATTTCTCATTAACAG
Seq C2 exon
GGTATCACATTATCAAACCGGATGTTATCAGCAAGTTGGAGCAAGGAGAAGAGCCATGGATAGTAGAAGGAGAATTCCTACTTCAGAGCTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164631:ENST00000405858:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCAGTGTCATTCAAGGAC
R:
GGATAGCTCTGAAGTAGGAATTCTCC
Band lengths:
221-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains