BtaINT0164909 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039782 | ZNF12
Description
zinc finger protein 12 [Source:HGNC Symbol;Acc:HGNC:12902]
Coordinates
chr25:39054972-39055715:-
Coord C1 exon
chr25:39055562-39055715
Coord A exon
chr25:39055068-39055561
Coord C2 exon
chr25:39054972-39055067
Length
494 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TCTCTTGTATCTATTAACAGGGT
3' ss Score
9.34
Exon sequences
Seq C1 exon
CCAGTTCCCACTATGGTGCCATTACAGGGGTCAGTGTCATTCAGGGACGTGGCCGTGGACTTCACCCAGGAGGAGTGGCAGCACCTAGACCCTGAGCAGAAGACGACCTACAGGGACGTGATGCTGGAGAACTACAGCCACCTCATCTCTGTGG
Seq A exon
GTGAGGAGAGAGAGAAATGAGATTTCCCTCTAACTTAATGGTTTTAACTTTGAACTTGTGGGCTTCCCAGGTGGCACAGTGGTAAAAGAACCACCTGCCAGTGCAGGAGGTGTAAGAGATTCAGGTTCGATCTTATGAAACTGAATTGGGTTGGGAAGATCCCCTGGAGAAATGGAAACCCACTGCAGTATTCTTGCTTGGAAAATCCCTTGGAAAGAGGAACCTGGCAATCTGCAGTCCGTGGGGTTGCCTAGAGTCAGCTGACCAAGTATACACACACAGAGACACACACTTTAACTTTGAACTTGACAGAACAACTGGAATCATCTGGGGTACCAGGTGGGGCATGTGGTCTCTACCTCAAGGTAGGTTCTGATTCTGGCACAGCACCAATGGCACTTCTCTCCTGTAGCTCATAAGCCAGCCTTTTGCTTACATGACAGATCTGGAAGCCCAGCAGCCAAGTTCAAGTTCTCTCTTGTATCTATTAACAG
Seq C2 exon
GGTGTCACATTATCAAACCAGAAGTCATCACCAAATTGGAGCAAGGAGAAGAGCCGTGGGTGGTGGAAGGAGAATTCCTGCTTCAGAGTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039782:ENSBTAT00000053303:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=78.8)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCCACTATGGTGCCAT
R:
TGGGTGACTCTGAAGCAGGAA
Band lengths:
248-742
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]