BtaINT0165008 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007074 | ZNF192
Description
Bos taurus zinc finger protein 389 (ZNF389), mRNA. [Source:RefSeq mRNA;Acc:NM_001145131]
Coordinates
chr23:30282153-30286078:-
Coord C1 exon
chr23:30285893-30286078
Coord A exon
chr23:30282228-30285892
Coord C2 exon
chr23:30282153-30282227
Length
3665 bp
Sequences
Splice sites
5' ss Seq
AAGGAAAGA
5' ss Score
2.38
3' ss Seq
CAGCCATATCAGTTTCACAGAGT
3' ss Score
-0.62
Exon sequences
Seq C1 exon
GTCCCAGCTCGTCCACATGGACATAGGGTACTCTGGGAGGAGTTGATGCATTCAGAATCTGCACCGGAGCCTCCAGATACTCAGCTCCAACCTGTGGCAATGCAGCACAAATCTGCAGTTCTCCAAGGGCCACATGATAGAGGTGAGGAGCCAGATTTCACTGCTGAGGAGGGAGGAAGTGAAAAG
Seq A exon
GAAAGAAAGTACATTCAGGACACCTATCTAGTTCCTTGAACCAAGAACTAGAATCTGCTGTTTACAGACTGGTCATAAGATCTGATTTAAATTTCATCTAAGCTTCAAATACAGACTGTCAGTCCCAGTGGTAAATTCAAGAACAAATGAAAGAATTTGGGGATTTTATAGCTTCGTATGTTTCTGTTACCACAGTGTATTTACTGCATAGGCATAGGCATTTTTAGATTTTGTTGGTATCCCATGCCATTTTATTTGTACTTCAGTATGTCTTTTCTTAAACAAGAGCATTTTCATAGATACCACAATGAATTGATCACAGTTATAAAACACTCATATTTTGCCAGCTGTCCCAAAGTTTTTCCAGAGTCTAGTCCAGGATCACACTTTGCAAATAGTTATCCTGTCTCTTTACTCACCTTTTACTTGGAATAGTTCCTCAGCCTTTCTTTGCCTTCCATAATCTTGAATTTGTGAAGAGTACAAGTCAATTATTTTGTAGAATGACAACAATTTGAGTTTGTGTGATGTTTTCTCTTATTTAGATTCAAATTGTGCCTATTTGGCAGGAACACCTCACAAGTGATTTTGTATCCTTCTCAGGAATATGACAGGAATTTGTCTATTGTTGGTAGTGTTTTTTTCGATGACTTTTTTAAGGTTGTCCTTGCTAGGTTTTTGTTACTGTTTTTCCCTTTGTAATTAATAAGTAATTTCTGGGGATATACTGTTGAGTCTGTGTATCAGTAAATACCCTGGTCTTCATCAAACTTGTGTTGCTGAAACACTAGTTTTAGTATTTGTTGATGCTCCTTCATTGAATCAATGATTGCTAAAGTGATTATTTTCTATCATTGTTGTTCAGTCGCTAAGTCATGTCCAACTCTTTGTGACCCCATAGAGTTCAGCATGCCAGGCTTCCCTGTCCTTCAGTATCTCCTGGAGTTTGCTCAAATTCATCTCCATAGAGTCAGTGATGCCATCTTACCCTCTCATCCTCTATTGCCCCTTCTCCTCCTTTTGCCTTCAGTCTTTTCCAGCATCAGGGTCTTTTCCAGTGAGTTGGCTTTTCACATCAGGTGGCCAAAGTATTAGAGTTTCAGCTTCAGCATCAGTCCTTCCAGTGAATGTTCAGGGTTGATCTTTAGAATTGACTGGTTTGATCTCCATGCAGTCCAGGGGACTTAGAAGAGTCTTCTCCAGCACCATAATTTGAAATCATCAATTCTTTGGCGCTCAGCCTTCTTTATGGTCCACCTCTCACATCTATACATGACTACTGGAAAAACCATAGCTTTGAGTATACAGACCATTGTCAATAAAGTGGTCTTTGCTTTTTAATATGTTGTTTAGGTTTGTCATAGCTTTCCTTCCAAGGAGCAACCATCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTTGGAGCCCAAGAAAAGAAAATCTGTCACTGCTTCTACTTTTTTCCCTTCCGTTTGCCATGAAGTGATGGGACTGGATGCCATGATCTTCATTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCACTTTCACTTTCATCAAAAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCGTCTGCATATCTGAGGTTGTTGATGTTTCTCCCAGCAATCCTGATTCCAACTTGTGATTCATACAGCCTGGCATTTCAGATGATGTGCTCTGCATATAAGTTAAATAAACAATGACAATATACAGCCTTGTTATACTCCTTTCCCAATTTTGAACCAGTCAGTTGTTCCATGTAAGATTGTAACTGTTGCTTCTTGACCCATATACAGGTTTCTGAGAAGACAGGTGAGATAGTCTGGTATTCCCATGTCTTTAAGAATTTTCCACAGCTTGCCGGATACACACAGCCCAAGGTTTTCACATAGTCAAGGAAGCAGAAATAGGTGTTTTTCTGGAATTCCTGTGCTTTCTGTATGATCCAGTGAATGTTGGCAATTTGATATCTGGTTCCTCTGCCTTTTCTAAGTCCAACTTGTATATCTATAAGTTCTCGGTTCACATACTGCTGAAGCCTAGTTTGAAGGATTTTGAAGCCTAGTTTGAAGCATTACCTTACTAGCATACGAAATAAGCACAATTGTCCAGTAATTTGAACATTCTCTGGCATTGCTCTTCTTGGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCAACTGCTGAGTTTTCCAAATTTTCTGACATACTGAGTGTAACACTTTAACAGCATCATCCTTTAGGATTTTAAATAGCTCAGCTAGAATTCCATCACCTCCACTAGCTTTGTTTGTAGTAATGCTACCTAAGGCCCACCTAACTTCACACTCCAGGTTGTCAGGTCTAGGTAAATGACCACACAGCCATGGTTATCTGAGTCATTAAGATCTTTTTTGTATAGTTCTTCTGTGCATTCTTCCTTTCTCTTAATCTCCTCTGCCGCTATTAGTTTCTGTCCTTTATCATGCCCATCCTTGCATGAAATGTTCCCTTCATATCTCCAGTTTTCTTAAAGAAATCTCTAGTCTCCCATTCTGTTGTTTCCTCTACTTCCTTGCATTGTTCATCGAAGAAGGCCTTCTTACCTCTCCTTGGTATTCTCTGGAACTCTGCATTCTGTTGGGTATATCGTTCCCTTTCTCCCTTGCTTTTCACTTCTGTTCTTTTCTCAGCTATTTGTAAAGCCTCCTCAGACAACCATTTTGCCTTCTTGCATTTCTTTTTCTTTGGGATGGTTTTGGTCACTACCTCCTGTACAATGTTTTTGTATTTATTTGTTTACTGTAATGGAGAGTGTTCCCTCCTTCCCCCATTTTATTTTACTCATTTTTTATTTATCAATATGTACTCATAAATTCATTTTTTTTCTTTCTGTTATTCTCTTTATTTTGATGCTTAAATTGTCTCAGGGTTGGCTATAGGAGGCCTCTTCCATCTCACTCCTGCGTCCTATTGACTTTTCTCCATAATTTTTGTGATTTTTCTTACTTTTTTATAGAACAAGATGTTCTAGTCTCATATCATACTTGCACTATGTTTCTTATTTTTTTATTTATGTGGTTTCATAGTTTGTTTTAAATTACTAGATTTTTAATGTTTCTAAAACAATTCTTATGTAAAATTCTAATACCTGTTGTGCAAGACACAGTAGTCCATTTTGATTTTTTTATTACCCTGTCTGATATCTATAGGAAGCAGATACTGGCAGTCATGGTAGACATTTCAAAAAAGTGATAGAGTTAGTAGAGATAGATTTGTTCCCATATTCAGTTTGACAAAAGATTAGGACCTAAAGAAATACTGTGTACAAGCACAAGAATGGACTATAGCTTTGATGGTAGAGAAGAAATTGTAAAGCAATTCCTGTTAGGAAACCAGTAAACATTCTATTTTTGACAGGTAGCTTCAAGCTGAGTGGACCATCAAAGTACAGGTGTTTTGTGGGCAACCATAGGTATGGACACGTAGTCGAAGACTAACAGAATTTCATATGCAAAATCTCTGGCATGCATATCTGCTGAAATATACAAAATTTTGGAATATGTTAGTGCTGGTTCCTATAACCATAGGACAAGGCTGGTCTCATTCGTATCTCCTTTCTCCTCTCAGCCATATCAGTTTCACAG
Seq C2 exon
AGTCCTACCCCTTCCCAGAAAGGAAGTCCTCGAGACCAGGAGATGACAGCTACACTGCTTACAGCAGGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007074:ENSBTAT00000065431:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.858 A=NA C2=0.964
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]