HsaINT0186384 @ hg38
Intron Retention
Gene
ENSG00000198315 | ZKSCAN8
Description
zinc finger with KRAB and SCAN domains 8 [Source:HGNC Symbol;Acc:HGNC:12983]
Coordinates
chr6:28149483-28151936:+
Coord C1 exon
chr6:28149483-28149624
Coord A exon
chr6:28149625-28151844
Coord C2 exon
chr6:28151845-28151936
Length
2220 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TAGCTCCTTTCTCCTCTCAGCCA
3' ss Score
6.49
Exon sequences
Seq C1 exon
GTCTCAGCTCGCGTACATGGACATAGGGTACTCTGGGAGGAGGTAGTACATTCAGCATCTGCACCAGAGCCTCCAAATACTCAGCTCCAATCTGAGGCAACCCAACATAAATCTCCAGTGCCCCAAGAGTCACAAGAGAGAG
Seq A exon
GTGAGTAGCCAGATTTCATTGATGATAAGGGGGGGAAGTACAAATAAAAGTCCATTTGGGATACCTATCTAGTTCCTGAAGAACCAGGAACTAAAATCCTGTTTACAGACCAGTCCCAAAGTCTGTGTTTAAATGTTTAGGCTTCAAATATAGATTATTCTTTCTAGTGGTAAACTCATGAACAAATTAAATAATTTGACTTTTTTTTTTTTAATTTTTTTTCCTTTTATTATTATACTTTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATATTTCTGTTACCACAGTACATTTACAACATACATTTTTGAGGTTATGCTGGTATTGTCATGCCACTTTATTTGGAAATATTTCAGTATGTATTTCCTCAGACGAGCATTTCTTAGGTAACTTAAATAAATAAATTCCTAAATTTATCACAATTAAGAAATGTAGTATTGCTACAATACTAACCTAGGCCATAGTTCATATTTTGACAGTTGCCCCAATTATGTTCTTTCTGGTTCAGAGTCTAGTCTGGCGTCACACTTTGTGGTTAGTTGTCATGGCTGTTTAGTCTCCTTTACTTTGGAATAGTTCCTCAACCTTTCTTTTTTTTTGAAGAGTACAGGTGTGTTATTTTGTAGAATGGCTGCAGTTTGGATTTGCGTGATGTTTGATCATGTTTACATTGAGGTCATATATATTTGGCAGGAACACCTCACCCTGCCAAGGATACATGACCTAAATCTTAACAAGAGATGTTGTACTCCTTCTTAGGGGTACAACAGGAATTTGTCCTATTATTGGTGGTGTTATCTTTGATGACTTGGTTAAGGTTATTCTTGCAGGGTTAATCATTGTATAGTTACTATTTTTCCCTTTGTAACTAATAAGTAATTTGTGGAAGATACTCTTGAGTGTATTTAAATATCTTAGTCCTCATTAAACTTTGTTGCTAAAACACTAGTTTTAGTGTTCATTGGTACTTCTTGACTGACTTAGTGATTACTAGAATGGTTATGAAATAGTGATTTTCTAACTCTGTCATTCCTTCTACATTTCTTTATTGTAAAGGAGAGTGCTCCCTTCTCCCAATTTTATTATTTTTTATTTATCAGTATGGACTCAAATTCGTATTTATTCCATAAATATTCTGTTACTGTCTTTATTTTGTTTTTGTTTTGTCTTTGAGACAGAGTCTCACTCTGTCATCCAGGCTGGAGTACAGTGGCACGATCTCAGCTCACTGCAGCTTCTGCCTCCCGGGTTCCAGCGATTCTTAATCCTCAGCTTCCCCAGTAGCTGGGATTACAGGTGCACGCCACCATGCCTGGCTAATTTTTGTATTTTTGTAGAGACGAGGTTTCACTGTGTTGGCCAGGCTGGTCTCGAACTCCTAGCCTCAAGCGATCTGCCCACTTCAGCCTCCCAAAGTGCTGGGATTACAGCCATGAGCCACTGTGCTCGGCCACTGTCTTTATTTTGCTAAATCATCTCAGATTTGGCCATAGAAGGCCCCTTCAGTCTGGCTCTTGTATCCTCTTGACATTTTCCCATTGTTTTTTTGAGAATTTTTTTACTTTATTGCAGAATGAGGTGTTCCAGTCTCATCTTCCCCTGCATTTCATATTTTTTCATTAATGTGATTTAGAGTAGTTTATAAATATGAATTTTTAATATTTCTAAAGAAGCATTAAAACACTTAATACTTCTTGTCTAAAGTCCTAAAGCTTGTTACCTGAGATACAGTAATCTATATTTTAATAATAAGCCGTTTAATATCTATAGAAAGCAAATACTGGGAGCCATAGTAGACATTTCAGAAAGGTAATTAATTAATAGAGACTGGTTGATTCTGATACTTGGTTTGCCAAGAGATTAGGACCTAAGGAAATACTGTATACAGCCACAAAGACAGAAGTAGTTTTGATGGTAGAGAAGAAATTGAAAAGCGATTCCTGTTAGGAAACCAGTATACTTTCTATTTTTGAGTGTAACTTCAGTCTGACTTCAGGGACATCGGGGTGCGTATGTTTTGTGGGGCAGCCATAGATATGGCCCCAGAATCCAAGATATCAGCACTTCATGTGCAAAATCTTTGGCATACATGTATATCTGCTGAAATAAAAATAATTTGGAATGGGTGAGTGCCAGCTCCCACAACCACAGGACAGGACTGGTCTCATTCATAGCTCCTTTCTCCTCTCAG
Seq C2 exon
CCATGTCTACTTCCCAGAGTCCTACTCGTTCCCAGAAAGGAAGTTCTGGAGACCAGGAAATGACAGCTACACTTCTCACAGCAGGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198315:ENST00000330236:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=NA C2=0.968
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains