RnoINT0169041 @ rn6
Intron Retention
Gene
ENSRNOG00000053635 | Zkscan8
Description
zinc finger with KRAB and SCAN domains 8 [Source:RGD Symbol;Acc:1308983]
Coordinates
chr17:45084455-45087940:+
Coord C1 exon
chr17:45084455-45084623
Coord A exon
chr17:45084624-45087848
Coord C2 exon
chr17:45087849-45087940
Length
3225 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TAGCTCCTTTCTCCTCTCAGCCA
3' ss Score
6.49
Exon sequences
Seq C1 exon
GTCTCAGCTCATACACATGGGCACAGAGTACTCTGGGATGAAGTCATACCTTCAAAATCTGCATCAGAACCTCCAAGTATTCATGTCCAACCCATGGCAACCATGCCTAAATCTCCTGTGCCCCAGAAGCCACACGACAGAGGAGAGAGGCCAGATTTCACTTATAAAG
Seq A exon
GTGAGGAAAAAGACTTGTATTTGGGTTACCTGTCTCCTTCAGGAATTAGCATTAGTGTTTGAGTAGTCCCAATCTTCTGGGTTCGAATGTTATACGTGAACTTTTCCTATGCAGATAAATAGCTGTTGATCCCTACTGGGGCACAAAGAAACACACCAAAGAAACAATATTGAAAACTAACTTAGGAACCATTGAATTTAATTGGGGACATGGGTAGCTTAGCATCAGCTACACCACTAAAGAAATCTCTTAGCACCAGTTAAGTACCTACATGAAAATGGGGAAGGAACTTGTGATCCTTCCCCACTCTAGCAGCTGGGAGTTCTGAAGATAGACTTATCAGTTCTAGTGATAAGCTCATGAACAAAGAACTTGAGGGTTTTTTTTTTTAATGGATTCATACACTTATTAATTCCATTTATAGCACACATATATATATGTACATATATATATATATTTAGATTTTGCTAGTATCATAACATTATATTTACGAATACTTCAGTACTTTTTGTATTTTTGATAAGAAGACAGTTAGAATTGCTGATGCTGACCTAATCTACGGTTCATACTCATCTTTTGCCAGTTGTCCCAGTGGTTTTTCTGGTCTAGAGCCCACTCTATGACCATAATGCAGGTAATGATAAATTATTCAGGATCCTTTAATTTGGCATTTTTTGCATTATTTCTTGGTCTTTCTTTTTATGACCTTAACAGTTTTAAAGAACATAGGCTACAAATTAGGTTTGTTTGAACTTTTTTCATATTTAGGTTCAAGTTGGATATATTTAGCAAGAACACTACAGAAAATTGGCCTATTATTTTTGATGACTTAAGATTAATCTTGCTAGGTTAATCACTAAAGTCATTGTTCTTCCTTTTATAATTAAGTAATTTAGGAAGAAGTTCTCATTAAGCTTTGTAAAGTCTTAACCTTTATCAACCTTGTTGCTAAAACAGTTATTTTAATATTGATATTTCCACTTTATTTTATTAAAGCTTCTTAATTGAGTCAGGGATTATTACTAAACCAGTTACAAGTGGTACTCTCTCAGTCATTCCTTCTACATTGTTGTATTGTCTGTCTTAAGAGAAAGCATTTACTTCTTTCTTTTCTAGTTTACCTGTGGGTACATATGTGGAGACTAGAAGTCATATTGGGCATATTCTGTCCCCGCCACACACACACCTTACTTTTATTACTATTAGTGGGTGAACACAGACATACACCTATAGGGCAGAGAATAACTTTTTTCAAGAGTCAGGTCTTTGCATCCACTATGGGTTCCAGAAATTGAACTTGAGCTGTTCGGCTTATATTGAAAGCACCTCCCCCCAACCCCATGTTCTCTCTGACCCCTCTACCTTATTTTTTGAGATGGGGTCTTTCCCTGAAATGTATGTCAATTTCTGCTAGATTATCTGACCTCCAGGCCCCCCCAGGGTCTATCTGTTTCTATTCTCTTTCAATTCCCAATGTTGGGCCTTCAAACATACGACTTTTGGGTGGGTGATGGGATTTTGAACTTACATCCTCATATGTGCACAGCAAGCACTTAACCACTGAGCCATCATGCCAGCCCCAAGTGTGTGTAGAGATATGGGTGGATATGTCTGTGTTGTTTTGGGCAATGCTAAGTATCCTAACTCAGGGTGTTACTCACCCAAGACAAACACTCTTCTAACCGAGCCATGTCCTCAATCCTTCCTTTTTACTGCTGTTGTTTACTCATGGGCATATAAATTCTTTGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTAGAACTCATTTGTGATCAGGCCTGGGCCTCAAATGGGTGTGGTGGTCCTCCTGCCTCTACCATCAGGGCTGGAGCTAAGGCATTTGCCATCCCATCAGCATATAAGAGAACTTTTAATATTTCTACACTGGATCTTAGTCAAAAGGCCCAAGAATTTTTAATATTTCGAAGGAATCAGCATAGAAACACTTTAGTTAATTATGTAATTCTTGTCTAAAATCAGAAATCTTATTGCCCAAGATGTATGTTGCTTAACTATAAGGTTGATTTTGCCAATAAAATGCTCAGTGTCCATGAGAAACAGCCATGAGCAGCCATGGCAGAGATCAGCAAGGTAACAGACTTACTAGAGATTGGTTGGTTTTCAGGTTCAGTTTCTAGGACACTGGGATCTAAAGAGCATTATACATAAACACAAAGATACTACTTTTGGTAGGGAAGAAATTAGAAAGCAACTCCCACTAGGAAATCAGTATACTTAATTTATTTGACTGTATAAGTCAGGTACATTAAAGTACAGATGTTCTTGAGCATTCATGGCTATGGACCAGAGTCCAAAACCTCAGCACTTTATATGCAAAACCCTTGGCATATATATGCTGAAATAAAATAATTTTGGATAAGTGAATGCCAGCTCCCACAATCATGCAATAAAACTAGGCAATTCATAGCTCCTTTCTCCTCTCAG
Seq C2 exon
CCATGTCTTCTTCTCAGAAACCTACTCCTTCCCAAAAAGGAAGTTCTGGAGATCAGGAGGTGACAGCTAGACTTCTCACTGCAGGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053635:ENSRNOT00000088280:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=NA C2=0.806
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]