RnoEX0101946 @ rn6
Exon Skipping
Gene
ENSRNOG00000053635 | Zkscan8
Description
zinc finger with KRAB and SCAN domains 8 [Source:RGD Symbol;Acc:1308983]
Coordinates
chr17:45084455-45097013:+
Coord C1 exon
chr17:45084455-45084623
Coord A exon
chr17:45088266-45088389
Coord C2 exon
chr17:45089256-45097013
Length
124 bp
Sequences
Splice sites
3' ss Seq
AGGGTCTTGTTTTGTTTCAGACT
3' ss Score
8.18
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTCTCAGCTCATACACATGGGCACAGAGTACTCTGGGATGAAGTCATACCTTCAAAATCTGCATCAGAACCTCCAAGTATTCATGTCCAACCCATGGCAACCATGCCTAAATCTCCTGTGCCCCAGAAGCCACACGACAGAGGAGAGAGGCCAGATTTCACTTATAAAG
Seq A exon
ACTTTGGAAAAGATCGAAGACATGGCTGTGTCTCTTATTCGAGAGGAATGGCTTCTTGATCCATCACAGAAGGATCTGAATAGAGATAACAGACCCGAGAAATACAGAAATATGTTCTCCCTGG
Seq C2 exon
ATGGTGAGACCAGGAATGAGAACAAGGAACTATTTTCAAAACAGGTAATATCTCCCAGAATCCAGCCACATGGAGAGGCAACTGCCAAGTGCAACGGGGATATTATCGTGGGTCTTGAGCATGGAGAAACCCAAGACCTTCTGGGCAAGTTAGAGAGGCATCAGGGAAATCACACACAAGAGAAACGACATAAATGTGATGAATGTGGGAAAAGCTTTGCTCAGAACTCAGGCCTTGTTCGCCACTGGAGAATACACACTGGAGAGAAACCCTATCAGTGTAATGTGTGCAGTAAAGCCTTCAGTTACAGGTCAGCCCTTCTTTCCCATCAGGATATCCACAACAAAGTGAAGCGCTATCACTGCAAAGAATGTGGTAAGGCCTTCAGTCAGAACACAGGCTTGATCCTGCACCAGAGAATCCACACTGGGGAGAAGCCCTATCAGTGTAATCAGTGTGGGAAGGCCTTTAGTCAGAGTGCAGGCCTTATTTTGCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053635_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=0.548 C2=0.212
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
PF0135222=KRAB=WD(100=92.9)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF0136316=FYVE=WD(100=19.3),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=8.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTAAATCTCCTGTGCCC
R:
GTGTGTGATTTCCCTGATGCCT
Band lengths:
244-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]