MmuEX0053078 @ mm10
Exon Skipping
Gene
ENSMUSG00000063894 | Zkscan8
Description
zinc finger with KRAB and SCAN domains 8 [Source:MGI Symbol;Acc:MGI:1913815]
Coordinates
chr13:21513222-21525306:-
Coord C1 exon
chr13:21525138-21525306
Coord A exon
chr13:21521786-21521909
Coord C2 exon
chr13:21513222-21520962
Length
124 bp
Sequences
Splice sites
3' ss Seq
AGGGTCTTGTTTTGTTTCAGACT
3' ss Score
8.18
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTCTCAACTCATACACATGGGCACAGAGTACTCTGGGATGAAGTCATACCTTCAAAATCTGCATCAGAACCTCCAAGTATTCACGTACAATCCTTGGCCACCGTGCCCAAATCTCCAGTGCCCCAGAAACCACAGGACAGGGGAAAGAGGCCAGATTTCACTTACAACG
Seq A exon
ACTTTGGAAAGGATTGAAGACATGGCTGTGTCTCTTATTCGAGAGGAGTGGCTTCTTGATCCATCACAGAAGGATCTGAATAGAGATAACAGGCCCGAGAAATACAGAAACATGTTCTCCCTGG
Seq C2 exon
ATGGCGAGACCAGGAGTGAGAACAAGGAATTATTTCCAAAACAGGGAATATCTCCCGGAATCCAGCCACATGGAGAGGCAACTGCCAAGTGCAATGGGGATGTTATTGTGGGTCTTGCACATGGAGAAACCCAAGACCTTCTGGGCAAACTAGAGAGGCACCAGGGAAATCCCACACAAGAGAGACGACATAAATGTGATGAATGTGGGAAAAGCTTTGCTCAGAACTCAGGCCTTGTTCGCCACTGGAGAATACACACTGGAGAGAAACCCTATCAGTGTACTGTGTGCGGTAAAGCCTTCAGTTACAGGTCGGCCCTTCTTTCCCATCAGGATATCCACAACAAAGTGAAGCGCTATCACTGCAAGGAATGTGGTAAGGCCTTCAGTCAGAACACAGGCTTGATCCTACACCAGAGAATCCACACTGGGGAGAAGCCCTATCAATGTAATCAGTGTGGGAAGGCCTTTAGTCAGAGTGCAGGCCTTATTTTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063894_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.649 A=0.467 C2=0.253
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
PF0135222=KRAB=WD(100=92.9)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=8.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGTACAATCCTTGGCCAC
R:
TGCCTCTCTAGTTTGCCCAGA
Band lengths:
249-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types