BtaEX6098767 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007074 | ZNF192
Description
Bos taurus zinc finger protein 389 (ZNF389), mRNA. [Source:RefSeq mRNA;Acc:NM_001145131]
Coordinates
chr23:30279774-30282227:-
Coord C1 exon
chr23:30282153-30282227
Coord A exon
chr23:30281701-30281824
Coord C2 exon
chr23:30279774-30279980
Length
124 bp
Sequences
Splice sites
3' ss Seq
AGCATCTTGTTTTGTTTCAGACT
3' ss Score
8.33
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
AGTCCTACCCCTTCCCAGAAAGGAAGTCCTCGAGACCAGGAGATGACAGCTACACTGCTTACAGCAGGGTTCCAG
Seq A exon
ACTTTAGAGAAGATTGAAGACATGGCTGTGTCCCTAATTCGAGAAGAATGGCTTCTTGATTCATCCCAGAAAGATCCGAGTAGAGATAACAGGCCAGAGAATTATAGAAACATGTTCTCCCTGG
Seq C2 exon
GTGGTGAGACCAGGAATGAGAACAGGGAATTAACTTCAAAACAGGTAATATCTACTGGAATCCAGCCACATGGAGAGACAGCTGCCAAATGCAACGGGGATGTTATCGGGGGTCTTGAGCCTGGAGAAGCCCGAGACCTTCTGGGCTCATTAGAGAGGCAGCGGGGAAATCCCACCCAAGAGAGACGACATAAATGTGATGAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007074-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=0.675 C2=0.394
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=92.9)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCCCTTCCCAGAAAGGA
R:
ATTTCCCCGCTGCCTCTCTAA
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]