HsaEX0073144 @ hg38
Exon Skipping
Gene
ENSG00000198315 | ZKSCAN8
Description
zinc finger with KRAB and SCAN domains 8 [Source:HGNC Symbol;Acc:HGNC:12983]
Coordinates
chr6:28151845-28159472:+
Coord C1 exon
chr6:28151845-28151936
Coord A exon
chr6:28152261-28152384
Coord C2 exon
chr6:28153056-28159472
Length
124 bp
Sequences
Splice sites
3' ss Seq
GGGATCTTGTTTTGTTTCAGACT
3' ss Score
7.84
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CCATGTCTACTTCCCAGAGTCCTACTCGTTCCCAGAAAGGAAGTTCTGGAGACCAGGAAATGACAGCTACACTTCTCACAGCAGGGTTCCAG
Seq A exon
ACTTTGGAGAAGATTGAAGACATGGCTGTGTCCCTTATTCGAGAGGAGTGGCTTCTTGATCCATCACAGAAGGATCTGTGTAGAGATAACAGGCCAGAAAATTTCAGAAACATGTTCTCCCTGG
Seq C2 exon
GTGGTGAGACCAGGAGTGAGAACAGGGAATTAGCTTCAAAACAGGTAATATCTACTGGAATCCAGCCACATGGAGAGACAGCTGCCAAATGCAACGGGGATGTTATCAGGGGTCTTGAGCATGAAGAAGCCCGAGACCTTCTGGGCAGATTAGAGAGGCAGCGGGGAAATCCCACACAAGAGAGACGACATAAATGTGATGAATGTGGGAAAAGCTTTGCTCAGAGCTCAGGCCTTGTTCGCCACTGGAGAATCCACACTGGGGAGAAACCCTATCAGTGTAATGTGTGTGGTAAAGCCTTCAGTTACAGGTCAGCCCTTCTTTCACATCAGGATATCCACAACAAAGTAAAACGCTATCACTGTAAGGAGTGTGGCAAAGCCTTCAGTCAGAACACAGGCCTGATTCTGCACCAGAGAATCCACACTGGGGAGAAGCCATATCAGTGCAATCAGTGTGGGAAGGCTTTCAGTCAGAGTGCGGGCCTTATTCTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198315_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=0.476 C2=0.234
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=92.9)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.1),PF0136316=FYVE=WD(100=19.9),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=8.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCTCACAGCAGGGTTCC
R:
GCTCTGAGCAAAGCTTTTCCC
Band lengths:
250-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development