BtaINT0165028 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005572 | ZNF205
Description
Bos taurus zinc finger protein 205 (ZNF205), mRNA. [Source:RefSeq mRNA;Acc:NM_001034473]
Coordinates
chr25:2561248-2561809:+
Coord C1 exon
chr25:2561248-2561461
Coord A exon
chr25:2561462-2561717
Coord C2 exon
chr25:2561718-2561809
Length
256 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GGACCTCTCTCCTCTCTCAGCCC
3' ss Score
7.57
Exon sequences
Seq C1 exon
ACTCCAGGTCATGGGCATTCTTGTCAAGAAATGCTCTCTGAGTCAGAGGGGACAGTGCCTCTAGGAGAGGCCCGGGAGTCACCCCACATCAAGATGGAGCCAGAGGAGCCGCACCCTGAAGGGGTGTCACAGGAGACCAGAGCTGAAGGAGCGCGGGGCTGGGTGCCCCTAAGCCAGGGCACTAAGGAGAAAGTGTGTTTCCTGCCTGGAGGAG
Seq A exon
GTGAGAAAGGGAACGGGGAGAGGGGCCCTTTCCCTGCTCCCAGCCCAGGTAGGAAGACCCAGGTGTCTGCCCCACCTTCCCTGCAGAAGCTGCCCGACTCACCCTCAGAGCCCACTGACCCTCCTCTCGGGTCAGGTTGGGGGGTGGAGTTGGAGGCAGCGGGGGGTCCCTGGTGGGCCTGGCATTCATTCAGTCCCGGGAGCAGGAGGGCCAAGCAGGGCGAGGTGGCCGCCTGAGGACCTCTCTCCTCTCTCAG
Seq C2 exon
CCCTCCCAGCCCCCCAGACCCCTGTGCTCTCCCGCGAGGGGAGGACCAGAGACCGGCAGATGGCCGCGGCGCTCCTCACCGCCTGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005572:ENSBTAT00000007323:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTCATGGGCATTCTTGT
R:
ATCTGCCGGTCTCTGGTCC
Band lengths:
272-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]