MmuINT0178610 @ mm9
Intron Retention
Gene
ENSMUSG00000062012 | Zfp13
Description
zinc finger protein 13 [Source:MGI Symbol;Acc:MGI:99159]
Coordinates
chr17:23717738-23718237:-
Coord C1 exon
chr17:23718045-23718237
Coord A exon
chr17:23717830-23718044
Coord C2 exon
chr17:23717738-23717829
Length
215 bp
Sequences
Splice sites
5' ss Seq
AAGGTCCGT
5' ss Score
6.16
3' ss Seq
AGGACCCTGTCTTCCTACAGTTG
3' ss Score
8.12
Exon sequences
Seq C1 exon
GTCCCAGGTAATGTGCAACACTGTGGAGACATGCTCTCTGGACAGGAGGAGACAGTGCCCTTGGGAACCTCTCAGGAGTCAACACACATCAAGGCAGAGCCAGAAGAGCCACACAGTGAGGGGGCATCACGGGAGGACAGGACTCCAGGAACACAGCGCTGGATGTCCCCGTGTCCTGGCCCTAAGGACAAAG
Seq A exon
GTCCGTTCCTGCCTGGTGGAGGTAGGAGAAGTGCTTTCTTGGAGAGGCATTCTGGGGAGGGTTGAGGGTTTTACCAAGGGATTCCAGGGTCCCAGATTTCCAGCTGCCTCCTGGTAGCTTTAGAGTGGGTTAAGTCTGGGGTGAGGTTTGAGGTAGCTGGGAGCACAGTGGCCCAGCGGGATGCTGGCTGCTCTGAGGACCCTGTCTTCCTACAG
Seq C2 exon
TTGTTCCTTCTCCCTGGACTCCTGTACTGTCCCGAGGGGGACGGACCAGAGAGCGAAAGATGGCTGCTGCACTCCTTACTGCCTGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062012-Zfp13:NM_011747:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.710
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCAGGTAATGTGCAACACT
R:
CTGGGACCAGGCAGTAAGGAG
Band lengths:
285-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: